RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

gcvB

Summary:

Name ID Genomic annotation Chromosome Strand
gcvB G0-8867 sRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 78 51211 0.77 0.76 8
Stat. Phase (Melamed et al. 2016) 49 95686 0.76 0.73 8
Iron Limitation (Melamed et al. 2016) 128 78390 0.78 0.77 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
abgB CDS Show interaction
acs CDS Show interaction
adk CDS Show interaction
alr CDS Show interaction
argP.5UTR 5UTR Show interaction Show interaction
argT.5UTR 5UTR Show interaction Show interaction
aroC CDS Show interaction
aroC.prmB.IGT IGT Show interaction Show interaction Show interaction
aroP.5UTR 5UTR Show interaction Show interaction Show interaction
asd.EST5UTR 5UTR Show interaction Show interaction
asnA CDS Show interaction Show interaction
bamD CDS Show interaction Show interaction
brnQ.5UTR 5UTR Show interaction
cfa.5UTR 5UTR Show interaction Show interaction
crfC.5UTR 5UTR Show interaction Show interaction
cstA CDS Show interaction
cstA.5UTR 5UTR Show interaction Show interaction Show interaction
cycA.5UTR 5UTR Show interaction Show interaction Show interaction
cysB CDS Show interaction Show interaction
cysJ.5UTR 5UTR Show interaction
dcyD.5UTR 5UTR Show interaction Show interaction Show interaction
dfp CDS Show interaction
dicA CDS Show interaction
dppA CDS Show interaction
dppA.5UTR 5UTR Show interaction Show interaction Show interaction
dtpA CDS Show interaction Show interaction
dtpB CDS Show interaction
ebgR CDS Show interaction Show interaction
ebgR.5UTR 5UTR Show interaction
envC CDS Show interaction
envZ CDS Show interaction
fabI.5UTR 5UTR Show interaction
fecA CDS Show interaction
fecA.5UTR 5UTR Show interaction
fhuE CDS Show interaction
fhuE.5UTR 5UTR Show interaction
fhuF.EST3UTR 3UTR Show interaction
fiu CDS Show interaction
fiu.5UTR 5UTR Show interaction
flgN CDS Show interaction Show interaction
fliK CDS Show interaction
fliL.5UTR 5UTR Show interaction
fliY.fliZ.IGT IGT Show interaction Show interaction Show interaction
ftsB CDS Show interaction
garD CDS Show interaction
gatY CDS Show interaction Show interaction Show interaction
gdhA CDS Show interaction Show interaction Show interaction
gdhA.5UTR 5UTR Show interaction Show interaction Show interaction
glcD.5UTR 5UTR Show interaction
glpC CDS Show interaction Show interaction
glpF.5UTR 5UTR Show interaction
glpR CDS Show interaction
gltI.5UTR 5UTR Show interaction Show interaction Show interaction
gltP.EST5UTR 5UTR Show interaction Show interaction
gpmM CDS Show interaction
hisQ.hisJ.IGT IGT Show interaction Show interaction Show interaction
hofM CDS Show interaction
icd CDS Show interaction Show interaction Show interaction
ilvB.ivbL.IGT IGT Show interaction Show interaction
ilvC.5UTR 5UTR Show interaction
ilvE.ilvD.IGT IGT Show interaction
ilvM CDS Show interaction Show interaction Show interaction
inaA CDS Show interaction
insA-5.uspC.IGR IGR Show interaction
insH-1 CDS Show interaction
insI-1 CDS Show interaction
insN-1 CDS Show interaction
isrC ncRNA Show interaction
ivbL CDS Show interaction Show interaction
kgtP CDS Show interaction Show interaction
lipA.5UTR 5UTR Show interaction Show interaction
livJ.5UTR 5UTR Show interaction Show interaction Show interaction
livK CDS Show interaction
livK.5UTR 5UTR Show interaction Show interaction
lldP.5UTR 5UTR Show interaction
lrp.5UTR 5UTR Show interaction
maeB.EST5UTR 5UTR Show interaction Show interaction Show interaction
malE CDS Show interaction
map CDS Show interaction Show interaction
mcrB CDS Show interaction Show interaction
metI CDS Show interaction
metQ.metI.IGT IGT Show interaction
mgrR sRNA Show interaction
mltC CDS Show interaction
nanA.5UTR 5UTR Show interaction
nanC CDS Show interaction Show interaction
nanC.5UTR 5UTR Show interaction
nanK CDS Show interaction
nlpA CDS Show interaction Show interaction
nrfG.gltP.IGR IGR Show interaction Show interaction
nuoA.lrhA.IGR IGR Show interaction
ompA CDS Show interaction
ompF.asnS.IGR IGR Show interaction
ompX.5UTR 5UTR Show interaction
oppA CDS Show interaction Show interaction Show interaction
oppA.5UTR 5UTR Show interaction Show interaction
panB.5UTR 5UTR Show interaction Show interaction
panD CDS Show interaction Show interaction
panD.5UTR 5UTR Show interaction Show interaction
pepQ.5UTR 5UTR Show interaction
pheL CDS Show interaction Show interaction
pheL.pheA.IGT IGT Show interaction
phoP CDS Show interaction
pmrD CDS Show interaction
pstS.glmS.IGR IGR Show interaction
purU CDS Show interaction Show interaction
raiA CDS Show interaction Show interaction Show interaction
raiA.5UTR 5UTR Show interaction Show interaction
recA CDS Show interaction
recA.5UTR 5UTR Show interaction
rffM CDS Show interaction
rhlB CDS Show interaction Show interaction
rihA CDS Show interaction Show interaction Show interaction
rmf CDS Show interaction Show interaction Show interaction
rodZ CDS Show interaction
rppH CDS Show interaction Show interaction
rpsT CDS Show interaction Show interaction
sdhE.5UTR 5UTR Show interaction Show interaction Show interaction
serA CDS Show interaction
serA.5UTR 5UTR Show interaction Show interaction Show interaction
soxS CDS Show interaction
sroC ncRNA Show interaction
sstT.5UTR 5UTR Show interaction Show interaction Show interaction
sucB.sucC.IGT IGT Show interaction Show interaction Show interaction
thrL CDS Show interaction Show interaction Show interaction
thrL.5UTR 5UTR Show interaction Show interaction Show interaction
tpx CDS Show interaction
trpC CDS Show interaction
trpD CDS Show interaction
trpE CDS Show interaction
ubiX.argT.IGR IGR Show interaction Show interaction Show interaction
waaP CDS Show interaction Show interaction
wcaM.galF.IGR IGR Show interaction
yabQ.rluA.IGR IGR Show interaction Show interaction
yafT.EST5UTR 5UTR Show interaction
yagU CDS Show interaction
yagU.EST5UTR 5UTR Show interaction
ybaN CDS Show interaction
ybbB CDS Show interaction
ybhP CDS Show interaction
ybiC CDS Show interaction
ychJ CDS Show interaction Show interaction
yciA CDS Show interaction
yciG CDS Show interaction
yciG.5UTR 5UTR Show interaction
ydcD CDS Show interaction
ydcL CDS Show interaction
yddB CDS Show interaction
ydeE CDS Show interaction Show interaction
ydeE.EST5UTR 5UTR Show interaction
ydgC.AS AS Show interaction
ydhS.EST5UTR 5UTR Show interaction
ydiJ CDS Show interaction Show interaction
ydiJ.EST5UTR 5UTR Show interaction
yeiG CDS Show interaction Show interaction
yffR CDS Show interaction
yfhM CDS Show interaction Show interaction
yggX.mltC.IGT IGT Show interaction Show interaction Show interaction
yhdW.5UTR 5UTR Show interaction
yhjE CDS Show interaction Show interaction Show interaction
yidF CDS Show interaction
yifK CDS Show interaction Show interaction Show interaction
yifK.EST5UTR 5UTR Show interaction Show interaction Show interaction
yihY CDS Show interaction
yjiH CDS Show interaction
ylcI CDS Show interaction Show interaction
ynaE.EST5UTR 5UTR Show interaction
yoaB CDS Show interaction
yodB.serU.IGR IGR Show interaction
ysgA CDS Show interaction
ysgA.5UTR 5UTR Show interaction Show interaction Show interaction
zapE CDS Show interaction Show interaction
zitB CDS Show interaction Show interaction