RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

gcvB - dppA.5UTR interactions in library 'Exponential Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
gcvB dppA.5UTR sRNA 5UTR chr + 2942694 2942778 chr - 3707679 3707777 855 5.2
dppA.5UTR gcvB 5UTR sRNA chr - 3707385 3707872 chr + 2942714 2942870 1772 3.7

gcvB reads

dppA.5UTR reads