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RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

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Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
fnrS aceB.aceA.IGT sRNA IGT chr + 1409127 1409176 chr + 4217106 4217247 58 2.8
micL acpP sRNA CDS chr - 1958484 1958519 chr + 1151602 1151668 72 11.7
arcZ aegA sRNA CDS chr + 3350641 3350663 chr - 2585411 2585518 33 5.1
aceF afuC.EST3UTR CDS 3UTR chr + 127532 127570 chr - 277673 277680 14 1684.3
fnrS ahpF sRNA CDS chr + 1409126 1409172 chr + 641185 641377 537 2.0
ytfK ahpF CDS CDS chr + 4439780 4439835 chr + 641339 641379 37 3.2
mgrR alaX sRNA tRNA chr - 1622859 1622915 chr - 2518079 2518182 42 15.9
yeaD.EST3UTR allE.EST3UTR 3UTR 3UTR chr + 1864803 1864822 chr - 543191 543213 13 2865.7
lpp allE.EST3UTR CDS 3UTR chr + 1757418 1757620 chr - 543191 543214 30 18.7
ftsA.ftsZ.IGT allR IGT CDS chr + 105208 105265 chr + 533821 533864 16 131.1
fliT amyA CDS CDS chr + 2005785 2005973 chr + 2007030 2007461 13 52.4
narG.5UTR araG.araF.IGT_AS 5UTR AS chr + 1279816 1279874 chr + 1985109 1985131 16 286.4
folM.EST3UTR arcZ 3UTR sRNA chr + 1681784 1681845 chr + 3350676 3350698 49 280.9
pgpB.AS arcZ AS sRNA chr - 1339546 1339620 chr + 3350668 3350697 24 371.4
ydaN.AS arcZ AS sRNA chr - 1408947 1408975 chr + 3350670 3350697 87 75.7
yhaI.EST3UTR arcZ 3UTR sRNA chr + 3253301 3253335 chr + 3350678 3350698 12 66.3
ylcI.ybcW.IGR arcZ IGR sRNA chr - 580091 580130 chr + 3350670 3350697 26 402.4
brnQ.phoR.IGR arcZ IGR sRNA chr - 419548 419552 chr + 3350677 3350697 16 60.4
acrR.AS arcZ AS sRNA chr - 486019 486041 chr + 3350677 3350698 50 158.0
ytfQ.ytfR.IGT arcZ IGT sRNA chr + 4450846 4451062 chr + 3350668 3350698 322 32.8