lpp
Some transcripts interact with the RNA untranslated regions:
lpp.5UTR,
lpp.EST3UTR
Summary:
| Name | ID | Genomic annotation | Chromosome | Strand |
|---|---|---|---|---|
| lpp | EG10544 | CDS | chr | + |
Library breakdown:
| Library | # of unique Interactions | # of chimeric fragments | Fraction as 2nd | SIC score | Longest U-tract |
|---|---|---|---|---|---|
| Exp. Phase (Melamed et al. 2016) | 4 | 1358 | 0.25 | 0.00 | 3 |
| Stat. Phase (Melamed et al. 2016) | 7 | 2893 | 0.14 | 0.00 | 8 |
| Iron Limitation (Melamed et al. 2016) | 9 | 4459 | 0.22 | 0.11 | 8 |
Interaction table:
| Name | Genomic annotation | Exponential Phase | Stationary Phase | Iron Limitation |
|---|---|---|---|---|
| allE.EST3UTR | 3UTR | Show interaction | Show interaction | Show interaction |
| cpxP.3UTR | 3UTR | Show interaction | Show interaction | Show interaction |
| cyaR | sRNA | Show interaction | Show interaction | Show interaction |
| gadE.mdtE.IGT | IGT | — | Show interaction | — |
| mgrR | sRNA | — | Show interaction | Show interaction |
| micL | sRNA | Show interaction | Show interaction | Show interaction |
| rpoD.3UTR | 3UTR | — | — | Show interaction |
| ryfD | ncRNA | — | Show interaction | Show interaction |
| ryhB | sRNA | — | — | Show interaction |
| yicJ.selC.IGR | IGR | — | — | Show interaction |