RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

cpxP.3UTR

Summary:

Name ID Genomic annotation Chromosome Strand
cpxP.3UTR G7816.3UTR 3UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 47 3000 1.00 0.98 8
Stat. Phase (Melamed et al. 2016) 221 30404 1.00 0.99 8
Iron Limitation (Melamed et al. 2016) 57 5159 1.00 0.98 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
aceA CDS Show interaction
acpT CDS Show interaction
agp CDS Show interaction
alaE CDS Show interaction
alaS CDS Show interaction Show interaction
ampH CDS Show interaction Show interaction
amyA CDS Show interaction Show interaction
anmK CDS Show interaction
aphA CDS Show interaction
araJ CDS Show interaction Show interaction Show interaction
arfB CDS Show interaction Show interaction Show interaction
argR.mdh.IGR IGR Show interaction
arnD CDS Show interaction
artM CDS Show interaction
asmA CDS Show interaction
atpC CDS Show interaction
atpC.atpD.IGT IGT Show interaction
bamA CDS Show interaction
bamA.skp.IGT IGT Show interaction Show interaction Show interaction
bamB CDS Show interaction
bioD.uvrB.IGR IGR Show interaction
btuE CDS Show interaction
cas2 CDS Show interaction
cfa.5UTR 5UTR Show interaction Show interaction Show interaction
chaB CDS Show interaction
clpS CDS Show interaction
clpX CDS Show interaction
cobB CDS Show interaction
crp.5UTR 5UTR Show interaction
cspD.5UTR 5UTR Show interaction Show interaction
cspD.clpS.IGR IGR Show interaction
cycA.5UTR 5UTR Show interaction
cydA.5UTR 5UTR Show interaction
cysB.5UTR 5UTR Show interaction Show interaction Show interaction
dadX CDS Show interaction
dapB CDS Show interaction
dcuA CDS Show interaction
dcuC CDS Show interaction
ddlA CDS Show interaction Show interaction
dppA.proK.IGR IGR Show interaction
dps CDS Show interaction
dsbA CDS Show interaction Show interaction
dtpB CDS Show interaction Show interaction Show interaction
dtpB.uspA.IGR IGR Show interaction
ecnB CDS Show interaction
elaB CDS Show interaction
emrA CDS Show interaction Show interaction Show interaction
entS CDS Show interaction
evgA.5UTR 5UTR Show interaction
fabI CDS Show interaction
fabR CDS Show interaction Show interaction
fabZ CDS Show interaction
fadI CDS Show interaction
fbp CDS Show interaction
feaB CDS Show interaction
fecA.5UTR 5UTR Show interaction Show interaction
fes CDS Show interaction
flgE CDS Show interaction Show interaction
fliY CDS Show interaction
focA CDS Show interaction
folP CDS Show interaction
fumA CDS Show interaction
fumC CDS Show interaction
gabT.gabP.IGT IGT Show interaction
gadC CDS Show interaction
gatA CDS Show interaction
gatB CDS Show interaction Show interaction Show interaction
gatC CDS Show interaction
gcd.5UTR 5UTR Show interaction Show interaction Show interaction
gdhA CDS Show interaction
glpA CDS Show interaction
glpK CDS Show interaction Show interaction Show interaction
glpQ CDS Show interaction
glpT CDS Show interaction Show interaction Show interaction
gntU CDS Show interaction
hcaR CDS Show interaction
hdeD.5UTR 5UTR Show interaction
hflX CDS Show interaction
htpX CDS Show interaction Show interaction Show interaction
hupA CDS Show interaction Show interaction
hupB.5UTR 5UTR Show interaction Show interaction Show interaction
hycB.hycA.IGT IGT Show interaction Show interaction Show interaction
ilvL.ilvX.IGT IGT Show interaction
ilvX CDS Show interaction Show interaction
insCD-1 CDS Show interaction
insL-1.AS AS Show interaction
ivy CDS Show interaction
kgtP CDS Show interaction Show interaction
kgtP.EST5UTR 5UTR Show interaction Show interaction
kgtP.rrfG.IGR IGR Show interaction
kptA CDS Show interaction
lacY.lacZ.IGT IGT Show interaction
lepB CDS Show interaction
lexA CDS Show interaction
lhgO CDS Show interaction
lpp CDS Show interaction Show interaction Show interaction
lpxD.fabZ.IGT IGT Show interaction Show interaction
lrp.5UTR 5UTR Show interaction
lsrR CDS Show interaction
mazG CDS Show interaction
mcrA CDS Show interaction
mhpT CDS Show interaction
miaA.hfq.IGT IGT Show interaction
minC CDS Show interaction
mioC CDS Show interaction Show interaction Show interaction
mlaA CDS Show interaction
mokB CDS Show interaction
mrr CDS Show interaction
msbA CDS Show interaction
mscL CDS Show interaction
nadR CDS Show interaction
nagZ CDS Show interaction
nanA.5UTR 5UTR Show interaction Show interaction
nanC CDS Show interaction
napD CDS Show interaction
nlpE CDS Show interaction
nrdD.5UTR 5UTR Show interaction
nrfA CDS Show interaction
nrfA.5UTR 5UTR Show interaction Show interaction Show interaction
obgE CDS Show interaction
ompF CDS Show interaction Show interaction Show interaction
oppA CDS Show interaction Show interaction
oppA.5UTR 5UTR Show interaction
osmC CDS Show interaction
osmE.5UTR 5UTR Show interaction
osmY CDS Show interaction
otsB CDS Show interaction
paaX CDS Show interaction Show interaction Show interaction
panD.5UTR 5UTR Show interaction
pcm CDS Show interaction
pepB CDS Show interaction
pheT CDS Show interaction Show interaction Show interaction
phoA CDS Show interaction
pmrD CDS Show interaction
proP CDS Show interaction
putA CDS Show interaction
putP CDS Show interaction
rcdA CDS Show interaction
rcsD CDS Show interaction
rfbA CDS Show interaction Show interaction
rfbB CDS Show interaction Show interaction Show interaction
rfbC CDS Show interaction Show interaction Show interaction
rfbD CDS Show interaction
rluF CDS Show interaction
rmf CDS Show interaction
rng CDS Show interaction
rnlA CDS Show interaction
rpiB.5UTR 5UTR Show interaction
rpsP.5UTR 5UTR Show interaction
secM CDS Show interaction Show interaction Show interaction
serA CDS Show interaction
serA.5UTR 5UTR Show interaction
shiA CDS Show interaction
smg CDS Show interaction Show interaction
srlA CDS Show interaction Show interaction
talA.maeB.IGR IGR Show interaction
tamB CDS Show interaction
tatE CDS Show interaction
tcdA CDS Show interaction
tehA CDS Show interaction Show interaction Show interaction
thrS CDS Show interaction
tolB CDS Show interaction
truA CDS Show interaction Show interaction Show interaction
uspA.5UTR 5UTR Show interaction Show interaction Show interaction
uspE CDS Show interaction
waaP CDS Show interaction
waaS CDS Show interaction Show interaction
wbbI CDS Show interaction
wbbK.insH-7.IGR IGR Show interaction
wzzB CDS Show interaction
xanQ CDS Show interaction
xylE CDS Show interaction
yaaX CDS Show interaction
yacL CDS Show interaction
yadD CDS Show interaction Show interaction Show interaction
yafU.yafV.IGR IGR Show interaction
yafZ.ykfA.IGT_AS AS Show interaction
yajL CDS Show interaction
ybfL CDS Show interaction
ybgE CDS Show interaction Show interaction Show interaction
ycaM CDS Show interaction Show interaction Show interaction
ycbJ CDS Show interaction
ycgI CDS Show interaction
ychN CDS Show interaction
yciO.yciQ.IGT IGT Show interaction
ydbH CDS Show interaction
ydbJ CDS Show interaction
ydcD CDS Show interaction
ydcS CDS Show interaction
ydcU CDS Show interaction
ydgD CDS Show interaction
ydhC CDS Show interaction
ydhQ.5UTR 5UTR Show interaction
ydiZ CDS Show interaction
ydjF CDS Show interaction
ydjN CDS Show interaction Show interaction
yebE CDS Show interaction
yebW CDS Show interaction
yebZ CDS Show interaction
yecA CDS Show interaction
yedI CDS Show interaction
yeeZ CDS Show interaction
yehA.EST3UTR 3UTR Show interaction
yfaY CDS Show interaction Show interaction Show interaction
yfcD CDS Show interaction
yfdY CDS Show interaction
yfeC.5UTR 5UTR Show interaction
yfeS CDS Show interaction
yffS CDS Show interaction
yfhM CDS Show interaction
yggN.5UTR 5UTR Show interaction
yhaV CDS Show interaction
yhcO CDS Show interaction
yhgE CDS Show interaction
yhiD CDS Show interaction
yhiJ.yhiI.IGR IGR Show interaction
yhjJ.dctA.IGR IGR Show interaction
yiaJ CDS Show interaction
yieP CDS Show interaction Show interaction Show interaction
yifK CDS Show interaction Show interaction
yihG CDS Show interaction
yihG.5UTR 5UTR Show interaction Show interaction
yjcE CDS Show interaction
yjdC CDS Show interaction
yjeI CDS Show interaction Show interaction
yjhI CDS Show interaction
yjiH CDS Show interaction
yjiT CDS Show interaction
ymbA CDS Show interaction
ymfK CDS Show interaction
ynaE CDS Show interaction
yniC CDS Show interaction
yoaC CDS Show interaction
yoaJ CDS Show interaction
ypfJ CDS Show interaction
yqeB CDS Show interaction Show interaction Show interaction
yqfA CDS Show interaction
yqjA.5UTR 5UTR Show interaction
ytfP CDS Show interaction
ytjA CDS Show interaction
zitB CDS Show interaction