RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

hycB.hycA.IGT

Flanking gene IDs:

  • EG10475
  • EG10474

Summary:

Name ID Genomic annotation Chromosome Strand
hycB.hycA.IGT EG10475.EG10474.IGT IGT chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 66 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 1 21 0.00 -1.00 4
Iron Limitation (Melamed et al. 2016) 1 38 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction Show interaction Show interaction