RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ycbJ

Summary:

Name ID Genomic annotation Chromosome Strand
ycbJ G6473 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 19 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 3 140 0.00 -0.33 4
Iron Limitation (Melamed et al. 2016) 1 26 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction Show interaction
cpxP.3UTR 3UTR Show interaction
omrA sRNA Show interaction