RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

arcZ

Summary:

Name ID Genomic annotation Chromosome Strand
arcZ G0-8871 sRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 96 28271 0.99 0.98 6
Stat. Phase (Melamed et al. 2016) 282 64184 0.99 0.99 6
Iron Limitation (Melamed et al. 2016) 204 42440 1.00 0.99 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
C0343.fnrS.IGR IGR Show interaction
C0719.AS AS Show interaction
G0-10697.ychE.IGR IGR Show interaction Show interaction
G0-10700 ncRNA Show interaction
IS128.AS AS Show interaction
ackA.yfbV.IGR IGR Show interaction
acrR.AS AS Show interaction Show interaction Show interaction
acs CDS Show interaction
aegA CDS Show interaction Show interaction Show interaction
alaA.lrhA.IGR IGR Show interaction Show interaction Show interaction
aphA CDS Show interaction Show interaction
arcZ.elbB.IGR IGR Show interaction
argE.ppc.IGR IGR Show interaction
argP CDS Show interaction
argQ.argZ.IGT IGT Show interaction Show interaction
argQ.yqaB.IGR IGR Show interaction Show interaction
asd.yhgN.IGR IGR Show interaction
aspA CDS Show interaction Show interaction Show interaction
aspC.ycbL.IGR IGR Show interaction Show interaction Show interaction
astC CDS Show interaction
bamE CDS Show interaction Show interaction Show interaction
bax CDS Show interaction
betT CDS Show interaction Show interaction
bglX.osmF.IGR IGR Show interaction Show interaction Show interaction
blr CDS Show interaction Show interaction Show interaction
bluR CDS Show interaction
brnQ.5UTR 5UTR Show interaction Show interaction
brnQ.phoR.IGR IGR Show interaction
btuE.btuC.IGT IGT Show interaction Show interaction Show interaction
clcA CDS Show interaction Show interaction Show interaction
clpP CDS Show interaction
clpS CDS Show interaction Show interaction Show interaction
cobS CDS Show interaction Show interaction Show interaction
crp CDS Show interaction Show interaction Show interaction
cspD CDS Show interaction Show interaction Show interaction
cspF.ydfT.IGR IGR Show interaction Show interaction Show interaction
cstA.5UTR 5UTR Show interaction Show interaction Show interaction
cyaR sRNA Show interaction
cycA.fklB.IGR IGR Show interaction
cysA CDS Show interaction
cysB CDS Show interaction
dgt CDS Show interaction Show interaction
diaA CDS Show interaction Show interaction
djlA CDS Show interaction
dnaA CDS Show interaction
dnaB CDS Show interaction
dnaK CDS Show interaction Show interaction
dnaT CDS Show interaction
dppF CDS Show interaction
dps CDS Show interaction
emrA CDS Show interaction
emrD.tisB.IGR IGR Show interaction Show interaction Show interaction
entD CDS Show interaction Show interaction
entF CDS Show interaction
fbp.EST3UTR 3UTR Show interaction Show interaction
fecA.5UTR 5UTR Show interaction
feoB CDS Show interaction
fhuE CDS Show interaction
fiu CDS Show interaction
flhD.5UTR 5UTR Show interaction Show interaction Show interaction
flhE CDS Show interaction
fliA CDS Show interaction
fliC CDS Show interaction
fliF CDS Show interaction Show interaction Show interaction
flxA CDS Show interaction Show interaction
flxA.5UTR 5UTR Show interaction
folA CDS Show interaction Show interaction
folM.EST3UTR 3UTR Show interaction Show interaction Show interaction
fre CDS Show interaction Show interaction
fumA CDS Show interaction
fusA CDS Show interaction Show interaction
gadC CDS Show interaction
gadC.AS AS Show interaction Show interaction
gatZ CDS Show interaction Show interaction
gcvH CDS Show interaction Show interaction
gcvT CDS Show interaction Show interaction Show interaction
glpD.yzgL.IGR IGR Show interaction
glpK CDS Show interaction Show interaction Show interaction
glpT CDS Show interaction Show interaction Show interaction
glpT.5UTR 5UTR Show interaction
gltJ CDS Show interaction
gltP CDS Show interaction Show interaction Show interaction
glyQ CDS Show interaction Show interaction
gmr CDS Show interaction
gnsB CDS Show interaction Show interaction
gpmA CDS Show interaction Show interaction
gpsA CDS Show interaction Show interaction Show interaction
grcA.5UTR 5UTR Show interaction Show interaction
gshA CDS Show interaction
gsiB CDS Show interaction Show interaction
gsk CDS Show interaction Show interaction
guaA.guaB.IGT IGT Show interaction Show interaction
gyrA CDS Show interaction
hchA.5UTR 5UTR Show interaction
helD CDS Show interaction Show interaction Show interaction
hemX CDS Show interaction Show interaction
hflK CDS Show interaction
hflX.hflK.IGT IGT Show interaction
hisM.AS AS Show interaction
hrpA CDS Show interaction
hsdS CDS Show interaction Show interaction
hslR CDS Show interaction Show interaction
hupB.5UTR 5UTR Show interaction Show interaction
hybO CDS Show interaction
hypE CDS Show interaction Show interaction Show interaction
ibpA CDS Show interaction Show interaction Show interaction
insI-2.ydbC.IGR IGR Show interaction Show interaction Show interaction
isrC ncRNA Show interaction
kdsC CDS Show interaction Show interaction Show interaction
kefB CDS Show interaction Show interaction
kgtP.rrfG.IGR IGR Show interaction
kptA CDS Show interaction Show interaction
lacA.lacY.IGT_AS AS Show interaction
lacZ CDS Show interaction
lapB.pyrF.IGT IGT Show interaction Show interaction Show interaction
leuP tRNA Show interaction
lgoR CDS Show interaction
ligA CDS Show interaction Show interaction Show interaction
lptB CDS Show interaction Show interaction Show interaction
lptF CDS Show interaction Show interaction Show interaction
lpxC CDS Show interaction Show interaction
luxS.5UTR 5UTR Show interaction
lysR CDS Show interaction Show interaction Show interaction
maeA CDS Show interaction
maeB CDS Show interaction
malE CDS Show interaction Show interaction
malG CDS Show interaction Show interaction Show interaction
malT CDS Show interaction
mcbR.EST5UTR 5UTR Show interaction
mepS.5UTR 5UTR Show interaction Show interaction
metN CDS Show interaction Show interaction
mglA CDS Show interaction Show interaction
mglC CDS Show interaction Show interaction
minD CDS Show interaction Show interaction
mlaF CDS Show interaction Show interaction Show interaction
mnmE CDS Show interaction
mqo CDS Show interaction Show interaction
mqsA CDS Show interaction Show interaction
mqsR CDS Show interaction Show interaction
mrp CDS Show interaction
msrA.5UTR 5UTR Show interaction Show interaction Show interaction
mtgA CDS Show interaction
mutL CDS Show interaction
mutS.5UTR 5UTR Show interaction Show interaction
nanE.nanT.IGT IGT Show interaction
nanK CDS Show interaction
napF CDS Show interaction Show interaction Show interaction
nfrA CDS Show interaction Show interaction
nlpD CDS Show interaction Show interaction
nrdE CDS Show interaction Show interaction
nudF CDS Show interaction Show interaction
nuoE CDS Show interaction Show interaction
nuoM CDS Show interaction Show interaction Show interaction
ompA CDS Show interaction
ompC CDS Show interaction Show interaction Show interaction
ompF CDS Show interaction Show interaction Show interaction
ompT CDS Show interaction Show interaction Show interaction
opgD.EST5UTR 5UTR Show interaction Show interaction Show interaction
oppA CDS Show interaction Show interaction Show interaction
osmC CDS Show interaction
osmY CDS Show interaction
otsB CDS Show interaction
panD CDS Show interaction
pepP CDS Show interaction
pgi CDS Show interaction Show interaction Show interaction
pgpB.AS AS Show interaction Show interaction Show interaction
phoQ CDS Show interaction
plsB CDS Show interaction Show interaction
polA CDS Show interaction Show interaction
potE CDS Show interaction Show interaction
ppsR.ppsA.IGR IGR Show interaction
preT CDS Show interaction
priB CDS Show interaction
prlC CDS Show interaction Show interaction
ptrB CDS Show interaction
purA CDS Show interaction Show interaction
puuR CDS Show interaction
pykA CDS Show interaction
pykA.5UTR 5UTR Show interaction
queE CDS Show interaction
ratA CDS Show interaction
rbsD CDS Show interaction Show interaction Show interaction
rbsK CDS Show interaction Show interaction
rcnB CDS Show interaction Show interaction Show interaction
rcnR CDS Show interaction
rcsC CDS Show interaction
rdlA.ldrB.IGR IGR Show interaction
rdoA CDS Show interaction
recB CDS Show interaction Show interaction
rfbA CDS Show interaction Show interaction
rfe CDS Show interaction
rhaD.rhaA.IGT_AS AS Show interaction
rhlB CDS Show interaction
rhsC CDS Show interaction
rlmI CDS Show interaction Show interaction Show interaction
rmf CDS Show interaction
rodZ CDS Show interaction
rpmD CDS Show interaction
rpoB CDS Show interaction
rpoN CDS Show interaction Show interaction
rpsF CDS Show interaction
rseX.hchA.IGR IGR Show interaction
rsgA CDS Show interaction Show interaction Show interaction
rsmA CDS Show interaction Show interaction
rsmI CDS Show interaction
rspA.AS AS Show interaction
rssA CDS Show interaction Show interaction
ryeA ncRNA Show interaction Show interaction
sdaC CDS Show interaction Show interaction
secB CDS Show interaction Show interaction
secD CDS Show interaction Show interaction Show interaction
selD CDS Show interaction
sfsA CDS Show interaction Show interaction Show interaction
slp.dctR.IGT IGT Show interaction
smrB CDS Show interaction
speB.loiP.IGR IGR Show interaction Show interaction
sppA CDS Show interaction Show interaction
sstT.5UTR 5UTR Show interaction
sthA CDS Show interaction
sucD CDS Show interaction Show interaction Show interaction
sufE CDS Show interaction
sugE.5UTR 5UTR Show interaction
tabA CDS Show interaction Show interaction
talB CDS Show interaction
tar CDS Show interaction Show interaction Show interaction
tas CDS Show interaction
tdcE CDS Show interaction Show interaction
thrC CDS Show interaction
thrS CDS Show interaction Show interaction
tktB CDS Show interaction
tmcA CDS Show interaction Show interaction
tnaA CDS Show interaction Show interaction Show interaction
tnaC CDS Show interaction Show interaction
tnaC.tnaA.IGT IGT Show interaction Show interaction Show interaction
tolC.5UTR 5UTR Show interaction Show interaction
tpx CDS Show interaction
tpx.5UTR 5UTR Show interaction
trpB CDS Show interaction
trxA.5UTR 5UTR Show interaction
ucpA CDS Show interaction Show interaction
uspA CDS Show interaction Show interaction Show interaction
uspB.5UTR 5UTR Show interaction Show interaction
uup CDS Show interaction Show interaction Show interaction
uvrB CDS Show interaction
valS CDS Show interaction Show interaction Show interaction
waaL.AS AS Show interaction Show interaction Show interaction
waaS CDS Show interaction Show interaction
waaY CDS Show interaction
waaZ.waaY.IGT IGT Show interaction
xylF CDS Show interaction
yadD CDS Show interaction Show interaction
yaeP CDS Show interaction Show interaction Show interaction
yagE CDS Show interaction Show interaction Show interaction
yahH.yahG.IGR IGR Show interaction
ybaM.mscK.IGR IGR Show interaction
ybcW.AS AS Show interaction
ybdK CDS Show interaction
ybeD CDS Show interaction
ybfL CDS Show interaction Show interaction
ybiA CDS Show interaction
ybiJ.EST3UTR 3UTR Show interaction
ycaC CDS Show interaction
ycbJ CDS Show interaction Show interaction Show interaction
ycgV CDS Show interaction
ychJ.5UTR 5UTR Show interaction
ychN CDS Show interaction
yciF.AS AS Show interaction Show interaction
yciT CDS Show interaction Show interaction
ycjG CDS Show interaction
ydaN.AS AS Show interaction Show interaction
ydcI CDS Show interaction Show interaction
yddB CDS Show interaction
ydeK CDS Show interaction
ydfW.flxA.IGR IGR Show interaction Show interaction Show interaction
ydhC CDS Show interaction
ydhL CDS Show interaction Show interaction
ydiJ CDS Show interaction Show interaction
yeaC CDS Show interaction
yeaE CDS Show interaction
yecE.AS AS Show interaction
yegE.EST3UTR 3UTR Show interaction
yegT CDS Show interaction Show interaction Show interaction
yejG.5UTR 5UTR Show interaction Show interaction
yfaY CDS Show interaction Show interaction
yfbV CDS Show interaction
yfdI.yfdK.IGR IGR Show interaction
yfdK.yfdI.IGR IGR Show interaction Show interaction
yfgD CDS Show interaction
yfjU.yfjT.IGR IGR Show interaction
ygaC.5UTR 5UTR Show interaction
ygfF CDS Show interaction
ygfT CDS Show interaction
ygfZ.AS AS Show interaction Show interaction
yghJ CDS Show interaction Show interaction
yghJ.EST3UTR 3UTR Show interaction
ygiM CDS Show interaction Show interaction Show interaction
ygiW CDS Show interaction
yhaI.EST3UTR 3UTR Show interaction
yhcB CDS Show interaction
yhcF CDS Show interaction
yhhH.yhhI.IGR IGR Show interaction
yhjY CDS Show interaction
yhjY.tag.IGR IGR Show interaction Show interaction Show interaction
yiaV.AS AS Show interaction Show interaction Show interaction
yicH CDS Show interaction Show interaction
yidC CDS Show interaction Show interaction
yidD CDS Show interaction
yifK CDS Show interaction
yigA CDS Show interaction Show interaction
yiiD CDS Show interaction
yijD.AS AS Show interaction Show interaction Show interaction
yjdC CDS Show interaction
yjfY CDS Show interaction
yjgA CDS Show interaction Show interaction
yjiA CDS Show interaction
ylaB CDS Show interaction
ylaC.maa.IGR IGR Show interaction
ylcI.ybcW.IGR IGR Show interaction Show interaction Show interaction
ymbA CDS Show interaction Show interaction Show interaction
ynaE CDS Show interaction Show interaction
ynfC CDS Show interaction Show interaction
ynfE CDS Show interaction
ynfK CDS Show interaction Show interaction
yoaC CDS Show interaction
yodD CDS Show interaction
ypfM CDS Show interaction Show interaction Show interaction
yphB CDS Show interaction
yphC CDS Show interaction
ypjA CDS Show interaction
yqcA CDS Show interaction Show interaction
yqeB.yqeA.IGR IGR Show interaction
yqeC CDS Show interaction Show interaction Show interaction
yqeI CDS Show interaction Show interaction
yqiB.AS AS Show interaction
yqjA.5UTR 5UTR Show interaction Show interaction Show interaction
ytfQ.ytfR.IGT IGT Show interaction Show interaction Show interaction
zupT.ribB.IGR IGR Show interaction