RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

hybO

Summary:

Name ID Genomic annotation Chromosome Strand
hybO G7554 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 3 79 0.00 -0.33 4
Stat. Phase (Melamed et al. 2016) 2 36 0.00 -0.50 4
Iron Limitation (Melamed et al. 2016) 1 126 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction
gadY cASt Show interaction
mgrR sRNA Show interaction
minE.ycgI.IGR IGR Show interaction
ryhB sRNA Show interaction Show interaction