RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ryhB

Summary:

Name ID Genomic annotation Chromosome Strand
ryhB G0-8872 sRNA chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 5 3763 0.80 0.60 9
Stat. Phase (Melamed et al. 2016) 3 135 1.00 0.67 9
Iron Limitation (Melamed et al. 2016) 178 72975 0.96 0.95 9

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
accA CDS Show interaction
accD CDS Show interaction
acnB CDS Show interaction
acnB.5UTR 5UTR Show interaction
acpP.fabF.IGT IGT Show interaction
aidB.yjfC.IGR IGR Show interaction
aspA CDS Show interaction Show interaction Show interaction
betI CDS Show interaction
bluR CDS Show interaction
bssS CDS Show interaction
cas3 CDS Show interaction
chbB CDS Show interaction
chbC CDS Show interaction
cheY CDS Show interaction
chiP CDS Show interaction
chiP.5UTR 5UTR Show interaction
cirA.5UTR 5UTR Show interaction
clpA CDS Show interaction
cra CDS Show interaction
crcB CDS Show interaction
cydA.5UTR 5UTR Show interaction
cysE.5UTR 5UTR Show interaction
cysJ CDS Show interaction
dacC.5UTR 5UTR Show interaction
dadA.5UTR 5UTR Show interaction
dcuA.5UTR 5UTR Show interaction
der CDS Show interaction
dgt CDS Show interaction
dinD.5UTR 5UTR Show interaction
dksA CDS Show interaction
dksA.sfsA.IGT IGT Show interaction
dmsA CDS Show interaction
dmsA.5UTR 5UTR Show interaction Show interaction Show interaction
dtpB CDS Show interaction
eda.edd.IGT IGT Show interaction
epmB CDS Show interaction
erpA CDS Show interaction
exbB CDS Show interaction
fabZ CDS Show interaction
fadJ CDS Show interaction
fdoG CDS Show interaction
fdx CDS Show interaction
fecA CDS Show interaction
fldA CDS Show interaction
flgA CDS Show interaction
flgN CDS Show interaction
fliA CDS Show interaction
fliC CDS Show interaction
fliF CDS Show interaction
flxA CDS Show interaction
folX CDS Show interaction
frdA.5UTR 5UTR Show interaction
ftsK CDS Show interaction
ftsQ CDS Show interaction
fumA CDS Show interaction
fumA.5UTR 5UTR Show interaction
fumB.dcuB.IGT IGT Show interaction
galM.3UTR 3UTR Show interaction
galU CDS Show interaction
garP CDS Show interaction
gatZ CDS Show interaction
gcvH CDS Show interaction
glpQ CDS Show interaction
glpT.5UTR 5UTR Show interaction
gltB CDS Show interaction
gltB.5UTR 5UTR Show interaction
gpmA CDS Show interaction
gpmM.5UTR 5UTR Show interaction
gshB CDS Show interaction
hemN.5UTR 5UTR Show interaction
hns CDS Show interaction
hpt CDS Show interaction
hscB CDS Show interaction
hybO CDS Show interaction Show interaction
hybO.5UTR 5UTR Show interaction
hypB CDS Show interaction
hypE.3UTR 3UTR Show interaction
infB CDS Show interaction
insI-1 CDS Show interaction
iscS.iscR.IGT IGT Show interaction
ispA CDS Show interaction
katG.5UTR 5UTR Show interaction
leuZ.yecA.IGR IGR Show interaction Show interaction
ligB CDS Show interaction
loiP.5UTR 5UTR Show interaction
lpd CDS Show interaction
lpp CDS Show interaction
lpxM CDS Show interaction
malE CDS Show interaction
mazF CDS Show interaction
mepS CDS Show interaction
metH.5UTR 5UTR Show interaction
mglC CDS Show interaction
minE CDS Show interaction
motB CDS Show interaction
mpl CDS Show interaction
mrp CDS Show interaction
msrB CDS Show interaction
msrB.5UTR 5UTR Show interaction
nanC.5UTR 5UTR Show interaction
napF CDS Show interaction
narG.5UTR 5UTR Show interaction
nirB CDS Show interaction
nuoA CDS Show interaction
nuoA.5UTR 5UTR Show interaction
nuoC CDS Show interaction
nuoF CDS Show interaction
nuoG.nuoF.IGT IGT Show interaction
ompT CDS Show interaction
paaJ CDS Show interaction
paaX CDS Show interaction
pdxK CDS Show interaction
pka.5UTR 5UTR Show interaction
ppc.5UTR 5UTR Show interaction
proP CDS Show interaction
ptsP CDS Show interaction
purA CDS Show interaction
ribB CDS Show interaction
ribF CDS Show interaction
rplL CDS Show interaction
rplU.5UTR 5UTR Show interaction
rpsO CDS Show interaction
rraB CDS Show interaction
rseA CDS Show interaction
rsmH CDS Show interaction
rstB CDS Show interaction
sbcB CDS Show interaction
sdhB CDS Show interaction
sdhC CDS Show interaction Show interaction
sdhC.5UTR 5UTR Show interaction
secM.EST5UTR 5UTR Show interaction
setA CDS Show interaction
shiA CDS Show interaction
shiA.5UTR 5UTR Show interaction
slyA CDS Show interaction
sodA.5UTR 5UTR Show interaction
sodB.5UTR 5UTR Show interaction
spoT CDS Show interaction
sraB ncRNA Show interaction
sucA CDS Show interaction
sufB CDS Show interaction
sugE CDS Show interaction
symR.hsdS.IGR IGR Show interaction
tdcC CDS Show interaction
tehB CDS Show interaction
thrB CDS Show interaction
tmk CDS Show interaction
tpx CDS Show interaction
trxA CDS Show interaction
trxA.5UTR 5UTR Show interaction
tusE CDS Show interaction
typA CDS Show interaction
tyrS CDS Show interaction
ubiD CDS Show interaction
ubiE CDS Show interaction
ubiJ CDS Show interaction
ves.5UTR 5UTR Show interaction
waaO CDS Show interaction
waaS CDS Show interaction
waaU CDS Show interaction
wbbH CDS Show interaction
yadE CDS Show interaction
ybaB CDS Show interaction
ybaO CDS Show interaction
ydbK.5UTR 5UTR Show interaction
yddB CDS Show interaction
ydfG CDS Show interaction
ydiJ CDS Show interaction
yeeX CDS Show interaction
yehA.EST3UTR 3UTR Show interaction
yfcE CDS Show interaction
yfdH CDS Show interaction
yfdK.yfdI.IGR IGR Show interaction
yfgD CDS Show interaction
ygeV CDS Show interaction
ygeV.5UTR 5UTR Show interaction
ygfZ CDS Show interaction
ygiQ CDS Show interaction
yhaJ CDS Show interaction
yhaO CDS Show interaction
yheT CDS Show interaction
yieP CDS Show interaction
yigZ CDS Show interaction
yihX CDS Show interaction
ykgF CDS Show interaction
ymdA CDS Show interaction
yncE.5UTR 5UTR Show interaction Show interaction
yqiB CDS Show interaction
yshB CDS Show interaction
zapB CDS Show interaction