RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

dksA.sfsA.IGT

Flanking gene IDs:

  • EG10230
  • EG10949

Summary:

Name ID Genomic annotation Chromosome Strand
dksA.sfsA.IGT EG10230.EG10949.IGT IGT chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 42 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 2 191 0.00 -0.50 5
Iron Limitation (Melamed et al. 2016) 2 184 0.00 -0.50 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arrS cASt Show interaction
micA sRNA Show interaction Show interaction Show interaction
ryhB sRNA Show interaction