RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

micA

Summary:

Name ID Genomic annotation Chromosome Strand
micA G0-8866 sRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 15 4438 0.60 0.53 7
Stat. Phase (Melamed et al. 2016) 79 18302 0.91 0.90 7
Iron Limitation (Melamed et al. 2016) 46 12936 0.80 0.78 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
G0-10697.ychE.IGR IGR Show interaction
aceK CDS Show interaction
actP CDS Show interaction
aldA CDS Show interaction Show interaction
aldA.EST3UTR 3UTR Show interaction
bamA CDS Show interaction
bamE CDS Show interaction Show interaction Show interaction
bax.AS AS Show interaction
ccmF CDS Show interaction
clpB CDS Show interaction
csiE CDS Show interaction
cydD CDS Show interaction Show interaction
cysB.5UTR 5UTR Show interaction Show interaction
dksA.sfsA.IGT IGT Show interaction Show interaction Show interaction
dmlR CDS Show interaction Show interaction
ecnB CDS Show interaction
entD.fepA.IGT IGT Show interaction
fabZ CDS Show interaction Show interaction
fhuA.5UTR 5UTR Show interaction
fliF CDS Show interaction Show interaction
fliG CDS Show interaction
ftsB.EST5UTR 5UTR Show interaction Show interaction
ftsX CDS Show interaction Show interaction
gadB CDS Show interaction
gatA CDS Show interaction
gatD CDS Show interaction
gltK CDS Show interaction
greA.5UTR 5UTR Show interaction Show interaction
hisJ CDS Show interaction
htpX CDS Show interaction
hupB CDS Show interaction Show interaction Show interaction
hybO.5UTR 5UTR Show interaction
icd CDS Show interaction
ispG CDS Show interaction
isrB ncRNA Show interaction Show interaction
ldrA CDS Show interaction
ldtC CDS Show interaction
ldtE CDS Show interaction
leuT.AS AS Show interaction
leuT.proM.IGT_AS AS Show interaction
leuV.leuP.IGT_AS AS Show interaction
loiP.5UTR 5UTR Show interaction
lrp CDS Show interaction
maeB.EST5UTR 5UTR Show interaction
malK.lamB.IGT IGT Show interaction
moaA CDS Show interaction Show interaction Show interaction
msrC CDS Show interaction Show interaction
narP CDS Show interaction
nmpC CDS Show interaction Show interaction Show interaction
ompA CDS Show interaction
ompA.5UTR 5UTR Show interaction Show interaction Show interaction
ompC CDS Show interaction
ompF CDS Show interaction Show interaction Show interaction
ompX CDS Show interaction
pck.5UTR 5UTR Show interaction Show interaction Show interaction
pheS.pheM.IGT IGT Show interaction Show interaction
phoP CDS Show interaction
phoP.5UTR 5UTR Show interaction
pka CDS Show interaction
preA CDS Show interaction
proS.5UTR 5UTR Show interaction
ptsI CDS Show interaction Show interaction
pykA CDS Show interaction Show interaction
rbsC CDS Show interaction Show interaction Show interaction
rcsD CDS Show interaction
rdoA CDS Show interaction Show interaction Show interaction
rfbA.rfbD.IGT IGT Show interaction
rfbX CDS Show interaction
rlmD CDS Show interaction
rodZ CDS Show interaction
rpoH.5UTR 5UTR Show interaction
rpoS CDS Show interaction
rpsF.5UTR 5UTR Show interaction
rybA ncRNA Show interaction
sdhA CDS Show interaction
sdhC.5UTR 5UTR Show interaction
sucA CDS Show interaction Show interaction
tdcB CDS Show interaction
tig.5UTR 5UTR Show interaction
tolB CDS Show interaction Show interaction Show interaction
tsr CDS Show interaction
tsx.5UTR 5UTR Show interaction Show interaction Show interaction
tufB CDS Show interaction
waaS CDS Show interaction
waaU.waaZ.IGT IGT Show interaction
ybaQ CDS Show interaction
ybfL CDS Show interaction
ycaQ CDS Show interaction
ycgB.5UTR 5UTR Show interaction
ycjD CDS Show interaction Show interaction
yddB CDS Show interaction
ygaM CDS Show interaction
ygaM.EST3UTR 3UTR Show interaction
yghJ CDS Show interaction Show interaction Show interaction
yjgA CDS Show interaction
yjiH CDS Show interaction
yjjZ CDS Show interaction
ysaB CDS Show interaction
znuA CDS Show interaction