RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

gatD

Summary:

Name ID Genomic annotation Chromosome Strand
gatD EG12417 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 20 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 3 186 0.33 0.00 5
Iron Limitation (Melamed et al. 2016) 1 62 0.00 -1.00 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction Show interaction
mgrR sRNA Show interaction
micA sRNA Show interaction
micL sRNA Show interaction