RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

cyaR

Summary:

Name ID Genomic annotation Chromosome Strand
cyaR G0-8878 sRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 136 32124 1.00 0.99 6
Stat. Phase (Melamed et al. 2016) 236 54298 0.98 0.98 6
Iron Limitation (Melamed et al. 2016) 198 42608 1.00 0.99 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
aceF.lpd.IGT IGT Show interaction
acpH CDS Show interaction
adhE CDS Show interaction Show interaction Show interaction
adrA CDS Show interaction
agp CDS Show interaction Show interaction
alaE CDS Show interaction
alr CDS Show interaction Show interaction Show interaction
alsE CDS Show interaction Show interaction
ampE CDS Show interaction Show interaction Show interaction
amtB CDS Show interaction
amyA CDS Show interaction Show interaction Show interaction
ansB CDS Show interaction Show interaction
ansB.5UTR 5UTR Show interaction
aqpZ CDS Show interaction
araJ.5UTR 5UTR Show interaction Show interaction Show interaction
arcB CDS Show interaction
arcZ sRNA Show interaction
arsB CDS Show interaction
ascB CDS Show interaction Show interaction
atpI CDS Show interaction Show interaction Show interaction
bamC CDS Show interaction Show interaction
bolA CDS Show interaction
cbpM CDS Show interaction
ccmC CDS Show interaction
cdd CDS Show interaction
clcA CDS Show interaction Show interaction Show interaction
clpB CDS Show interaction
clpP.5UTR 5UTR Show interaction Show interaction Show interaction
clpS CDS Show interaction Show interaction Show interaction
cmk CDS Show interaction
cobC.rsfS.IGR IGR Show interaction Show interaction Show interaction
cobU CDS Show interaction
crcB CDS Show interaction Show interaction
crcB.tatE.IGR IGR Show interaction Show interaction
crl CDS Show interaction
cspC CDS Show interaction
cstA CDS Show interaction Show interaction Show interaction
cydB CDS Show interaction Show interaction Show interaction
cyoB CDS Show interaction Show interaction Show interaction
cysQ CDS Show interaction Show interaction
dadA.5UTR 5UTR Show interaction Show interaction
damX CDS Show interaction
damX.aroB.IGT IGT Show interaction
dctA CDS Show interaction Show interaction
dcuA CDS Show interaction Show interaction Show interaction
dcuC CDS Show interaction Show interaction Show interaction
der CDS Show interaction
dnaE CDS Show interaction
dnaK CDS Show interaction
dpiB CDS Show interaction Show interaction
dsdC CDS Show interaction Show interaction Show interaction
dtd CDS Show interaction Show interaction
dtpB CDS Show interaction Show interaction Show interaction
dusC CDS Show interaction
ecnB CDS Show interaction
eda CDS Show interaction
emrD CDS Show interaction
eptB CDS Show interaction
exbB CDS Show interaction
exbB.5UTR 5UTR Show interaction Show interaction
exuT CDS Show interaction
fabG CDS Show interaction Show interaction Show interaction
fadD CDS Show interaction
fadL.yfcZ.IGR IGR Show interaction
fhuB CDS Show interaction
fieF CDS Show interaction Show interaction Show interaction
fimA.fimE.IGR IGR Show interaction
flgG CDS Show interaction Show interaction
flhB CDS Show interaction
flhD.5UTR 5UTR Show interaction
flhE.yecT.IGR IGR Show interaction
fliC CDS Show interaction Show interaction Show interaction
fliP CDS Show interaction
fliY CDS Show interaction Show interaction
frdD CDS Show interaction Show interaction
fruA CDS Show interaction Show interaction
fsaA.EST3UTR 3UTR Show interaction
ftnA.yecR.IGR IGR Show interaction
ftsA CDS Show interaction Show interaction
ftsE CDS Show interaction
ftsK CDS Show interaction Show interaction Show interaction
ftsW CDS Show interaction Show interaction Show interaction
ftsX CDS Show interaction Show interaction Show interaction
ftsY CDS Show interaction Show interaction Show interaction
ftsZ CDS Show interaction Show interaction
fumA CDS Show interaction
gapA CDS Show interaction Show interaction Show interaction
garP CDS Show interaction
gatB CDS Show interaction Show interaction Show interaction
gatD CDS Show interaction Show interaction
gcvH CDS Show interaction Show interaction
gcvP CDS Show interaction
glf CDS Show interaction Show interaction Show interaction
glgB CDS Show interaction Show interaction
glmU CDS Show interaction Show interaction
glpB CDS Show interaction Show interaction
glpD CDS Show interaction Show interaction Show interaction
glpF CDS Show interaction
glpT CDS Show interaction Show interaction Show interaction
gltS CDS Show interaction
gltX CDS Show interaction Show interaction Show interaction
gntP CDS Show interaction Show interaction
gntU CDS Show interaction Show interaction Show interaction
gpmA CDS Show interaction Show interaction
gpmM CDS Show interaction
greA CDS Show interaction
hdeA CDS Show interaction
hdeD CDS Show interaction
hdhA CDS Show interaction
helD CDS Show interaction Show interaction Show interaction
hflX CDS Show interaction Show interaction Show interaction
hisQ.hisJ.IGT IGT Show interaction
htpX CDS Show interaction
htrL CDS Show interaction Show interaction
hybB CDS Show interaction
ilvB CDS Show interaction Show interaction
insA-2 CDS Show interaction Show interaction Show interaction
insA-4 CDS Show interaction
insA-7 CDS Show interaction
insAB-1 CDS Show interaction Show interaction Show interaction
insL-1.AS AS Show interaction
kgtP CDS Show interaction Show interaction Show interaction
leuP.leuQ.IGT_AS AS Show interaction
leuS CDS Show interaction
leuT.AS AS Show interaction
lpp CDS Show interaction Show interaction Show interaction
lspA CDS Show interaction
lsrC CDS Show interaction
luxS CDS Show interaction
lysC CDS Show interaction Show interaction
lysP CDS Show interaction Show interaction
malK CDS Show interaction Show interaction
malS.bax.IGR IGR Show interaction
mdh CDS Show interaction Show interaction
mdh.5UTR 5UTR Show interaction Show interaction
mdtK CDS Show interaction Show interaction Show interaction
menF CDS Show interaction Show interaction
menI CDS Show interaction Show interaction
mepH.AS AS Show interaction
mepM CDS Show interaction
mepS CDS Show interaction
metY tRNA Show interaction
miaA.hfq.IGT IGT Show interaction Show interaction Show interaction
mlaA CDS Show interaction Show interaction
mntH CDS Show interaction Show interaction
modA CDS Show interaction Show interaction
mraY CDS Show interaction Show interaction
mscK.5UTR 5UTR Show interaction Show interaction
mscL CDS Show interaction Show interaction
mtfA CDS Show interaction Show interaction
mtr CDS Show interaction
murG CDS Show interaction Show interaction Show interaction
nadE.5UTR 5UTR Show interaction Show interaction Show interaction
nanA CDS Show interaction
nanT CDS Show interaction Show interaction
narK CDS Show interaction
narW CDS Show interaction
narX CDS Show interaction Show interaction
ndh CDS Show interaction
ndh.5UTR 5UTR Show interaction
nfrA CDS Show interaction
nhaA CDS Show interaction Show interaction Show interaction
nikB CDS Show interaction
nirC CDS Show interaction
nlpD CDS Show interaction Show interaction Show interaction
nrfD CDS Show interaction Show interaction
nuoL CDS Show interaction Show interaction Show interaction
ompA CDS Show interaction Show interaction Show interaction
ompF CDS Show interaction Show interaction
ompT CDS Show interaction
ompW CDS Show interaction
ompX CDS Show interaction Show interaction Show interaction
opgE CDS Show interaction Show interaction Show interaction
oppA CDS Show interaction
oppD CDS Show interaction Show interaction
oxyR CDS Show interaction
paaJ CDS Show interaction
patD CDS Show interaction
pfkA CDS Show interaction Show interaction
pgpB CDS Show interaction Show interaction Show interaction
pgpC CDS Show interaction
pitA CDS Show interaction Show interaction
pitB CDS Show interaction
plaP CDS Show interaction Show interaction
pnuC CDS Show interaction
polA CDS Show interaction
polB.AS AS Show interaction Show interaction Show interaction
pspF.AS AS Show interaction
ptsG CDS Show interaction Show interaction Show interaction
purT CDS Show interaction Show interaction
putP CDS Show interaction
raiA CDS Show interaction
rbsC CDS Show interaction Show interaction Show interaction
rdgC CDS Show interaction
recA CDS Show interaction Show interaction Show interaction
relB CDS Show interaction
rfbA CDS Show interaction Show interaction Show interaction
rfbB CDS Show interaction
rhtA CDS Show interaction Show interaction Show interaction
rimP CDS Show interaction Show interaction
rimP.metY.IGT IGT Show interaction Show interaction
rpmE CDS Show interaction
rppH CDS Show interaction Show interaction Show interaction
rpsK CDS Show interaction Show interaction Show interaction
rpsT CDS Show interaction Show interaction Show interaction
rpsT.5UTR 5UTR Show interaction Show interaction
rpsU.5UTR 5UTR Show interaction
rraA CDS Show interaction
rssA CDS Show interaction
rtcA CDS Show interaction Show interaction Show interaction
rutG CDS Show interaction Show interaction Show interaction
ryeA.yebY.IGR IGR Show interaction
sbmA CDS Show interaction Show interaction
secG CDS Show interaction Show interaction
secG.5UTR 5UTR Show interaction
slyB CDS Show interaction Show interaction Show interaction
smpB CDS Show interaction Show interaction Show interaction
smtA CDS Show interaction Show interaction Show interaction
sohB CDS Show interaction
ssb.5UTR 5UTR Show interaction Show interaction
tag CDS Show interaction
talA.maeB.IGR IGR Show interaction Show interaction
talB CDS Show interaction
tamA CDS Show interaction Show interaction
tcdA CDS Show interaction Show interaction Show interaction
tdcA CDS Show interaction
tdcC CDS Show interaction
thrS CDS Show interaction
tolB CDS Show interaction Show interaction Show interaction
tonB CDS Show interaction
trg CDS Show interaction
trkG CDS Show interaction Show interaction Show interaction
tsx CDS Show interaction Show interaction Show interaction
tus CDS Show interaction
ubiC CDS Show interaction Show interaction Show interaction
ucpA CDS Show interaction
umpG CDS Show interaction
uspB CDS Show interaction Show interaction
uspE CDS Show interaction Show interaction Show interaction
uspG.5UTR 5UTR Show interaction
ves.5UTR 5UTR Show interaction
waaB CDS Show interaction
waaF CDS Show interaction Show interaction Show interaction
wbbH CDS Show interaction Show interaction Show interaction
yacL CDS Show interaction Show interaction Show interaction
yadH CDS Show interaction
yaiL CDS Show interaction Show interaction
yaiZ CDS Show interaction Show interaction
yajC CDS Show interaction
yajR CDS Show interaction Show interaction
ybaL CDS Show interaction
ybbY CDS Show interaction Show interaction Show interaction
ybeD CDS Show interaction
ybfA CDS Show interaction
ybhQ CDS Show interaction
ybiO CDS Show interaction
ybiV.ybiW.IGR IGR Show interaction
ybjD CDS Show interaction
ycbZ CDS Show interaction
ychH CDS Show interaction
ychH.5UTR 5UTR Show interaction
ychJ CDS Show interaction Show interaction
ychN CDS Show interaction
yciC CDS Show interaction
ydaN CDS Show interaction Show interaction Show interaction
ydcH CDS Show interaction Show interaction Show interaction
ydcV CDS Show interaction
ydhC CDS Show interaction Show interaction
ydiU CDS Show interaction
yeaQ CDS Show interaction
yebE.yebF.IGR IGR Show interaction
yebO CDS Show interaction Show interaction Show interaction
yebW CDS Show interaction Show interaction
yecH CDS Show interaction Show interaction Show interaction
yedQ CDS Show interaction Show interaction
yeeE CDS Show interaction
yehU CDS Show interaction Show interaction
yeiH CDS Show interaction Show interaction Show interaction
yejO CDS Show interaction Show interaction Show interaction
yfcD CDS Show interaction
yfcE CDS Show interaction
yfdG CDS Show interaction Show interaction
yfdK.yfdI.IGR IGR Show interaction Show interaction Show interaction
yfdY CDS Show interaction Show interaction Show interaction
yfeH CDS Show interaction Show interaction
yffS CDS Show interaction
yfgJ.EST3UTR 3UTR Show interaction Show interaction
yfgO CDS Show interaction
yfiE CDS Show interaction
yfjW CDS Show interaction
ygaZ CDS Show interaction Show interaction
ygdQ CDS Show interaction Show interaction Show interaction
yghZ CDS Show interaction Show interaction Show interaction
yhfA CDS Show interaction
yicL CDS Show interaction Show interaction Show interaction
yidI CDS Show interaction Show interaction Show interaction
yieP CDS Show interaction
yjdC CDS Show interaction
yjeM CDS Show interaction
yjhB CDS Show interaction
yjjU CDS Show interaction Show interaction Show interaction
ymdF CDS Show interaction
ymfI.AS AS Show interaction
ymgE CDS Show interaction
ynaE CDS Show interaction Show interaction
ynfK CDS Show interaction Show interaction Show interaction
yniA CDS Show interaction
yoaC CDS Show interaction
yobF.5UTR 5UTR Show interaction
yohD CDS Show interaction Show interaction Show interaction
yqaB CDS Show interaction Show interaction
yqaE CDS Show interaction
yqeG CDS Show interaction
yqiB CDS Show interaction
yqjA CDS Show interaction Show interaction Show interaction
yrbG CDS Show interaction Show interaction
zapB CDS Show interaction Show interaction Show interaction
zapC CDS Show interaction
znuC CDS Show interaction
zwf CDS Show interaction Show interaction