RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

fabG

Summary:

Name ID Genomic annotation Chromosome Strand
fabG EG11318 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 160 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 1 156 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 2 237 0.00 -0.50 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction Show interaction Show interaction
ykgH.EST3UTR 3UTR Show interaction