RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

insAB-1

Summary:

Name ID Genomic annotation Chromosome Strand
insAB-1 G0-10535 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 3158 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 2 2120 0.00 -0.50 5
Iron Limitation (Melamed et al. 2016) 3 2616 0.00 -0.33 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
crl CDS Show interaction
cyaR sRNA Show interaction Show interaction Show interaction
mcaS sRNA Show interaction
omrB sRNA Show interaction