RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

mcaS

Summary:

Name ID Genomic annotation Chromosome Strand
mcaS G0-8899 sRNA chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 24 1792 0.92 0.88 7
Stat. Phase (Melamed et al. 2016) 14 5226 0.93 0.86 7
Iron Limitation (Melamed et al. 2016) 34 4423 0.94 0.91 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
G0-10698 ncRNA Show interaction Show interaction Show interaction
alaA.lrhA.IGR IGR Show interaction Show interaction Show interaction
apt CDS Show interaction
asd CDS Show interaction Show interaction
asd.EST5UTR 5UTR Show interaction
aspS.5UTR 5UTR Show interaction
bacA.5UTR 5UTR Show interaction Show interaction
crfC.5UTR 5UTR Show interaction Show interaction Show interaction
csgD CDS Show interaction
csgD.5UTR 5UTR Show interaction Show interaction Show interaction
dut CDS Show interaction
fhuC CDS Show interaction
fiu.5UTR 5UTR Show interaction
flhC CDS Show interaction Show interaction
flhD.5UTR 5UTR Show interaction Show interaction Show interaction
focA CDS Show interaction Show interaction
fur CDS Show interaction
ibpB CDS Show interaction Show interaction Show interaction
insAB-1 CDS Show interaction
lexA CDS Show interaction
lrhA CDS Show interaction Show interaction
melA.melR.IGR IGR Show interaction Show interaction
nagE.5UTR 5UTR Show interaction Show interaction
ompF CDS Show interaction
omrB sRNA Show interaction Show interaction
ppiD.5UTR 5UTR Show interaction Show interaction
rsuA CDS Show interaction Show interaction Show interaction
sbmA.5UTR 5UTR Show interaction Show interaction Show interaction
thrS.yniD.IGR IGR Show interaction
treC.treB.IGT IGT Show interaction Show interaction
yajG CDS Show interaction Show interaction
ychH CDS Show interaction Show interaction Show interaction
yciI.EST3UTR 3UTR Show interaction
ydcF CDS Show interaction Show interaction Show interaction
yfcA CDS Show interaction
ygaH CDS Show interaction
yncL CDS Show interaction Show interaction Show interaction
yncL.EST3UTR 3UTR Show interaction Show interaction
ypdA CDS Show interaction