RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

mcaS - csgD.5UTR interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
mcaS csgD.5UTR sRNA 5UTR chr - 1405686 1405753 chr - 1103181 1103302 301 4.0
csgD.5UTR mcaS 5UTR sRNA chr - 1102864 1103277 chr - 1405657 1405716 342 31.3
csgD.5UTR mcaS 5UTR sRNA chr - 1103278 1103363 chr - 1405657 1405719 298 3.8

mcaS reads

csgD.5UTR reads