RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

omrB

Summary:

Name ID Genomic annotation Chromosome Strand
omrB G0-8882 sRNA chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 15 669 0.80 0.73 8
Stat. Phase (Melamed et al. 2016) 42 2440 0.64 0.62 8
Iron Limitation (Melamed et al. 2016) 73 4250 0.71 0.70 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
G0-10700 ncRNA Show interaction
accD CDS Show interaction
acrZ CDS Show interaction Show interaction
asnW.yeeN.IGR IGR Show interaction
borD CDS Show interaction
borD.5UTR 5UTR Show interaction
csgD.5UTR 5UTR Show interaction Show interaction
cspA CDS Show interaction
cstA CDS Show interaction Show interaction
dctA.5UTR 5UTR Show interaction Show interaction
dedA CDS Show interaction Show interaction
dps CDS Show interaction
dtd CDS Show interaction Show interaction Show interaction
dxr CDS Show interaction
entB CDS Show interaction
fabA CDS Show interaction Show interaction
fabH CDS Show interaction
fecA CDS Show interaction
fliC CDS Show interaction
gadC CDS Show interaction
gntP CDS Show interaction Show interaction Show interaction
gyrA CDS Show interaction Show interaction Show interaction
hda CDS Show interaction
hflX CDS Show interaction
hflX.hflK.IGT IGT Show interaction
hfq CDS Show interaction
hpf.ptsN.IGT IGT Show interaction
htrL CDS Show interaction Show interaction
insAB-1 CDS Show interaction
insG CDS Show interaction
iscS CDS Show interaction Show interaction
ispA CDS Show interaction Show interaction
lpxP CDS Show interaction
lrp CDS Show interaction
malE CDS Show interaction
malE.5UTR 5UTR Show interaction Show interaction Show interaction
mcaS sRNA Show interaction Show interaction
mglB CDS Show interaction Show interaction
mlaA CDS Show interaction
msyB CDS Show interaction
nagB CDS Show interaction
nmpC CDS Show interaction Show interaction
nrdF CDS Show interaction
nrfA CDS Show interaction
nuoL CDS Show interaction
nusG CDS Show interaction Show interaction
ompC CDS Show interaction
ompF CDS Show interaction
ompR.5UTR 5UTR Show interaction
ompT CDS Show interaction Show interaction
pflB CDS Show interaction
ppk CDS Show interaction
rbsD CDS Show interaction Show interaction Show interaction
rcnB CDS Show interaction Show interaction Show interaction
rcsA.5UTR 5UTR Show interaction
rihC CDS Show interaction Show interaction Show interaction
rpsA CDS Show interaction Show interaction
smg CDS Show interaction Show interaction
tdcA CDS Show interaction
tktA CDS Show interaction
tnaA.tnaB.IGT IGT Show interaction
tnaB CDS Show interaction Show interaction Show interaction
tonB.5UTR 5UTR Show interaction
tyrV.tyrT.IGT IGT Show interaction
uspA CDS Show interaction
ves CDS Show interaction
waaL CDS Show interaction
waaO CDS Show interaction Show interaction
wbbI CDS Show interaction Show interaction
yahO.5UTR 5UTR Show interaction
ybhP CDS Show interaction
ycbZ CDS Show interaction
ycdT CDS Show interaction Show interaction
yceD CDS Show interaction
ychF.pth.IGT IGT Show interaction
ydaM CDS Show interaction
yejG.5UTR 5UTR Show interaction Show interaction
yejO CDS Show interaction
yfdI CDS Show interaction
ygeR CDS Show interaction
yhaM.yhaL.IGR IGR Show interaction
yihX CDS Show interaction Show interaction Show interaction
yjcH CDS Show interaction
yjcH.acs.IGT IGT Show interaction
ykfB CDS Show interaction
ymbA CDS Show interaction
ynaE CDS Show interaction Show interaction Show interaction
ypfG CDS Show interaction Show interaction
ytfQ CDS Show interaction
zupT.5UTR 5UTR Show interaction