RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ispA

Summary:

Name ID Genomic annotation Chromosome Strand
ispA EG10508 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 11 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 1 13 1.00 0.00 3
Iron Limitation (Melamed et al. 2016) 3 330 0.33 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
omrB sRNA Show interaction Show interaction
ryhB sRNA Show interaction
spf sRNA Show interaction
uhpT.EST3UTR 3UTR Show interaction