RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

spf

Summary:

Name ID Genomic annotation Chromosome Strand
spf EG30098 sRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 49 4165 0.92 0.90 6
Stat. Phase (Melamed et al. 2016) 14 556 0.64 0.57 6
Iron Limitation (Melamed et al. 2016) 58 5172 0.86 0.84 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
aceF.lpd.IGT IGT Show interaction
csgC.EST3UTR 3UTR Show interaction
csiD.5UTR 5UTR Show interaction
cyaA.5UTR 5UTR Show interaction
cysE CDS Show interaction
dhaK.5UTR 5UTR Show interaction
dps.EST3UTR 3UTR Show interaction
fabR CDS Show interaction Show interaction Show interaction
fhuF CDS Show interaction
flgM CDS Show interaction Show interaction
fliT.3UTR 3UTR Show interaction Show interaction
galT CDS Show interaction
gapA.yeaD.IGT IGT Show interaction
garP.5UTR 5UTR Show interaction
gcvH CDS Show interaction
gcvT.5UTR 5UTR Show interaction Show interaction
glpC CDS Show interaction
glpF CDS Show interaction
glpF.5UTR 5UTR Show interaction Show interaction Show interaction
gltA.5UTR 5UTR Show interaction Show interaction
gmhB.rrsH.IGR IGR Show interaction
gpsA CDS Show interaction
grcA.5UTR 5UTR Show interaction Show interaction
greB CDS Show interaction
insH-2.ybcQ.IGR IGR Show interaction Show interaction
ispA CDS Show interaction
lpcA CDS Show interaction
lpd CDS Show interaction Show interaction Show interaction
lptC CDS Show interaction
lrp CDS Show interaction Show interaction
lspA.fkpB.IGT IGT Show interaction Show interaction
lysS CDS Show interaction
maeB.EST5UTR 5UTR Show interaction Show interaction
mdh CDS Show interaction Show interaction Show interaction
nagE CDS Show interaction Show interaction
nanA CDS Show interaction Show interaction
nanC.5UTR 5UTR Show interaction Show interaction
nanT.nanA.IGT IGT Show interaction Show interaction
nudI CDS Show interaction
paaJ CDS Show interaction Show interaction Show interaction
pntB CDS Show interaction Show interaction
polA CDS Show interaction Show interaction
pspG.qor.IGR IGR Show interaction Show interaction Show interaction
purH CDS Show interaction
pyrL.5UTR 5UTR Show interaction Show interaction
rnhA.5UTR 5UTR Show interaction Show interaction
rpoC CDS Show interaction
rsmH CDS Show interaction Show interaction
sdaC CDS Show interaction Show interaction
sdhC.5UTR 5UTR Show interaction
slyB.5UTR 5UTR Show interaction Show interaction
srlA.5UTR 5UTR Show interaction Show interaction
sthA CDS Show interaction Show interaction Show interaction
sucB.sucC.IGT IGT Show interaction Show interaction
talB CDS Show interaction
talB.5UTR 5UTR Show interaction
tdcB.tdcA.IGT IGT Show interaction Show interaction
tdcC.tdcB.IGT IGT Show interaction
tktA.5UTR 5UTR Show interaction
tnaA CDS Show interaction
tnaA.tnaB.IGT IGT Show interaction Show interaction
tnaB CDS Show interaction Show interaction Show interaction
tnaC.tnaA.IGT IGT Show interaction Show interaction Show interaction
uspA CDS Show interaction Show interaction
waaJ CDS Show interaction
waaL CDS Show interaction Show interaction
wzzB CDS Show interaction Show interaction
ycfJ CDS Show interaction Show interaction Show interaction
yejA CDS Show interaction
yggX CDS Show interaction Show interaction
yhcN CDS Show interaction
yieE CDS Show interaction
yjiA CDS Show interaction Show interaction
yjiA.yjiX.IGT IGT Show interaction