RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

polA

Summary:

Name ID Genomic annotation Chromosome Strand
polA EG10746 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 2 30 0.00 -0.50 3
Stat. Phase (Melamed et al. 2016) 2 57 0.00 -0.50 6
Iron Limitation (Melamed et al. 2016) 1 18 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
arcZ sRNA Show interaction Show interaction
cyaR sRNA Show interaction
spf sRNA Show interaction Show interaction