RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

paaJ

Summary:

Name ID Genomic annotation Chromosome Strand
paaJ G6718 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 36 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 3 75 0.00 -0.33 4
Iron Limitation (Melamed et al. 2016) 3 223 0.00 -0.33 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cyaR sRNA Show interaction
raiA CDS Show interaction
ryhB sRNA Show interaction
spf sRNA Show interaction Show interaction Show interaction
uhpT.EST3UTR 3UTR Show interaction