RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

uhpT.EST3UTR

Summary:

Name ID Genomic annotation Chromosome Strand
uhpT.EST3UTR EG11054.EST3UTR 3UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 48 4559 1.00 0.98 7
Stat. Phase (Melamed et al. 2016) 11 181 1.00 0.91 7
Iron Limitation (Melamed et al. 2016) 94 7400 1.00 0.99 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
aceB CDS Show interaction
acnB CDS Show interaction
amiA CDS Show interaction
bglX.5UTR 5UTR Show interaction
cspB CDS Show interaction
cspF.ydfT.IGR IGR Show interaction Show interaction Show interaction
csrA CDS Show interaction
dapD CDS Show interaction
deoB.deoD.IGT IGT Show interaction
entF CDS Show interaction
exbB CDS Show interaction
fadA.fre.IGR IGR Show interaction
fecA.5UTR 5UTR Show interaction
fhuA CDS Show interaction
fiu.5UTR 5UTR Show interaction
flgL CDS Show interaction
flgM CDS Show interaction
flgN CDS Show interaction
fliA CDS Show interaction Show interaction
fliC CDS Show interaction Show interaction
fliD CDS Show interaction
fliP CDS Show interaction
ftnA.5UTR 5UTR Show interaction
fusA.rpsG.IGT IGT Show interaction
galU CDS Show interaction
gcvB.ygdI.IGR IGR Show interaction
gcvT.ubiI.IGR IGR Show interaction
glcA.yghJ.IGR IGR Show interaction
glgA CDS Show interaction
glpT CDS Show interaction Show interaction
gnsB CDS Show interaction Show interaction Show interaction
hemD CDS Show interaction Show interaction
htrL CDS Show interaction Show interaction
iraP.ddlA.IGR IGR Show interaction
ispA CDS Show interaction
lysC.5UTR 5UTR Show interaction
malE CDS Show interaction
malK CDS Show interaction Show interaction
malM CDS Show interaction
malZ CDS Show interaction
modE CDS Show interaction
motB CDS Show interaction
mqsR CDS Show interaction
nagE CDS Show interaction Show interaction
nanC.5UTR 5UTR Show interaction Show interaction
nanT CDS Show interaction Show interaction
nlpD CDS Show interaction Show interaction
nsrR CDS Show interaction Show interaction
nuoC.nuoB.IGT IGT Show interaction
ompC CDS Show interaction
ompF CDS Show interaction Show interaction
oppA CDS Show interaction
paaJ CDS Show interaction
pal CDS Show interaction
pyrG CDS Show interaction
raiA CDS Show interaction
rapZ CDS Show interaction
rbsD CDS Show interaction
rfbX CDS Show interaction
ribF CDS Show interaction Show interaction
roxA CDS Show interaction
rpmG CDS Show interaction Show interaction
rpmI.infC.IGT IGT Show interaction Show interaction Show interaction
rpsG CDS Show interaction Show interaction Show interaction
sfsA CDS Show interaction Show interaction
srlA CDS Show interaction
sstT.5UTR 5UTR Show interaction
tar CDS Show interaction
tdcA CDS Show interaction
tdcB CDS Show interaction Show interaction
tdcB.tdcA.IGT IGT Show interaction Show interaction
thrU tRNA Show interaction Show interaction Show interaction
thyA CDS Show interaction
tnaA CDS Show interaction Show interaction Show interaction
tnaB CDS Show interaction
tnaC.tnaA.IGT IGT Show interaction
tonB CDS Show interaction
tpx CDS Show interaction
tsx CDS Show interaction Show interaction
ubiC CDS Show interaction
ubiD CDS Show interaction
ubiE CDS Show interaction
ucpA CDS Show interaction Show interaction
uspD CDS Show interaction
uspE CDS Show interaction Show interaction
waaU CDS Show interaction
yaiA.aroM.IGT IGT Show interaction
ybgC CDS Show interaction
ybhQ CDS Show interaction
ybiT CDS Show interaction
ycbL.aspC.IGR IGR Show interaction
ychE CDS Show interaction
yciT CDS Show interaction
yddB CDS Show interaction
ydhF CDS Show interaction
ydjX.AS AS Show interaction Show interaction
yebO CDS Show interaction
yfaY CDS Show interaction Show interaction
yfiP CDS Show interaction Show interaction
ygaC.5UTR 5UTR Show interaction
yghJ.EST5UTR 5UTR Show interaction
yihY CDS Show interaction
yjbB CDS Show interaction
yjjI CDS Show interaction Show interaction
yncE.5UTR 5UTR Show interaction
ypfM.5UTR 5UTR Show interaction Show interaction
yqjA.5UTR 5UTR Show interaction Show interaction Show interaction
yqjC CDS Show interaction Show interaction Show interaction
ysaA CDS Show interaction Show interaction
ytfJ.ytfK.IGR IGR Show interaction
zapD CDS Show interaction