RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ribF

Summary:

Name ID Genomic annotation Chromosome Strand
ribF EG11079 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 14 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 1 19 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 3 208 0.00 -0.33 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
mgrR sRNA Show interaction
rydC sRNA Show interaction
ryhB sRNA Show interaction
uhpT.EST3UTR 3UTR Show interaction Show interaction