RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

mgrR

Summary:

Name ID Genomic annotation Chromosome Strand
mgrR G0-10671 sRNA chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 64 14846 0.95 0.94 8
Stat. Phase (Melamed et al. 2016) 68 12088 0.99 0.97 8
Iron Limitation (Melamed et al. 2016) 96 20572 0.98 0.97 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
aceB CDS Show interaction
ackA.yfbV.IGR IGR Show interaction
adhE CDS Show interaction Show interaction
alaX tRNA Show interaction Show interaction Show interaction
aldA CDS Show interaction
aldA.5UTR 5UTR Show interaction
amn CDS Show interaction Show interaction Show interaction
argX tRNA Show interaction Show interaction
aspA CDS Show interaction Show interaction Show interaction
brnQ.proY.IGT IGT Show interaction
ccmA CDS Show interaction
cdsA CDS Show interaction Show interaction
cheA CDS Show interaction Show interaction
cheZ CDS Show interaction
cspD.5UTR 5UTR Show interaction Show interaction Show interaction
cycA.5UTR 5UTR Show interaction
cysB.5UTR 5UTR Show interaction
cysJ CDS Show interaction
cysM.cysA.IGT IGT Show interaction Show interaction
dacC CDS Show interaction Show interaction Show interaction
dctA CDS Show interaction Show interaction Show interaction
ddlA CDS Show interaction Show interaction Show interaction
eptB CDS Show interaction
eptB.5UTR 5UTR Show interaction Show interaction Show interaction
fabA CDS Show interaction Show interaction
fhuB CDS Show interaction
fieF CDS Show interaction Show interaction
fliC CDS Show interaction Show interaction Show interaction
gatD CDS Show interaction
gatZ CDS Show interaction Show interaction
gcvB sRNA Show interaction
gcvT CDS Show interaction Show interaction Show interaction
ghrA.EST5UTR 5UTR Show interaction
glf CDS Show interaction Show interaction
glnH CDS Show interaction
glnH.5UTR 5UTR Show interaction Show interaction Show interaction
gloB CDS Show interaction Show interaction Show interaction
glpD.5UTR 5UTR Show interaction Show interaction Show interaction
glpE.5UTR 5UTR Show interaction
glpT CDS Show interaction
gutQ CDS Show interaction
hdeB CDS Show interaction
htrL CDS Show interaction Show interaction Show interaction
hybC CDS Show interaction
hybO CDS Show interaction
insA-7 CDS Show interaction Show interaction Show interaction
insA-7.yjhU.IGR IGR Show interaction
insH-1 CDS Show interaction
lpp CDS Show interaction Show interaction
lpxM CDS Show interaction Show interaction Show interaction
maeA CDS Show interaction Show interaction
malP.malT.IGR IGR Show interaction Show interaction
mdlA CDS Show interaction Show interaction
metI CDS Show interaction Show interaction
minD CDS Show interaction Show interaction Show interaction
motB CDS Show interaction Show interaction
mscS CDS Show interaction
mtr CDS Show interaction
murA CDS Show interaction
murA.ibaG.IGT IGT Show interaction
mutY.AS AS Show interaction
nanC CDS Show interaction
napH CDS Show interaction Show interaction
nlpD CDS Show interaction Show interaction Show interaction
ompT CDS Show interaction Show interaction Show interaction
paaX CDS Show interaction
parC CDS Show interaction
pepA.5UTR 5UTR Show interaction Show interaction
pitA CDS Show interaction Show interaction Show interaction
potA.pepT.IGR IGR Show interaction
pqqL CDS Show interaction
ptsI CDS Show interaction Show interaction
ratB CDS Show interaction Show interaction
rfbX CDS Show interaction
ribF CDS Show interaction
rimL CDS Show interaction Show interaction
rpiB CDS Show interaction Show interaction
rpoH.5UTR 5UTR Show interaction
rpoS CDS Show interaction Show interaction Show interaction
slyB.5UTR 5UTR Show interaction Show interaction
soxS CDS Show interaction Show interaction Show interaction
tdcB CDS Show interaction Show interaction
tig.5UTR 5UTR Show interaction Show interaction
tnaC.tnaA.IGT IGT Show interaction
ves.5UTR 5UTR Show interaction Show interaction
waaL CDS Show interaction
wbbH CDS Show interaction
wbbK CDS Show interaction
yagN.AS AS Show interaction
ybcY CDS Show interaction Show interaction
ybiB CDS Show interaction
ycbZ CDS Show interaction Show interaction Show interaction
ydcZ CDS Show interaction
ydcZ.EST3UTR 3UTR Show interaction
ydiK CDS Show interaction Show interaction
ydjM CDS Show interaction Show interaction
yeaG CDS Show interaction
yebO.yobF.IGR IGR Show interaction
yebZ CDS Show interaction Show interaction Show interaction
yeeZ CDS Show interaction
yeiS CDS Show interaction
yejE CDS Show interaction
yfaZ CDS Show interaction Show interaction
yfcA CDS Show interaction
yfcA.AS AS Show interaction
yffL.intZ.IGR IGR Show interaction Show interaction
yfjW CDS Show interaction Show interaction Show interaction
ygdH CDS Show interaction Show interaction
ygdQ CDS Show interaction Show interaction Show interaction
ygfB CDS Show interaction
ygfZ CDS Show interaction Show interaction Show interaction
yhjA CDS Show interaction
yidE CDS Show interaction Show interaction
yjbR CDS Show interaction
yjcE CDS Show interaction Show interaction Show interaction
yjhC CDS Show interaction
yjiT CDS Show interaction
ymbA CDS Show interaction Show interaction
ymcE CDS Show interaction
yncD CDS Show interaction
ynfF CDS Show interaction
yniA CDS Show interaction
yniC CDS Show interaction
yoaF CDS Show interaction
yobH CDS Show interaction
yqjA.5UTR 5UTR Show interaction Show interaction Show interaction
ytfB CDS Show interaction
ytfB.5UTR 5UTR Show interaction
ytfJ.ytfK.IGR IGR Show interaction Show interaction Show interaction
ytfK CDS Show interaction Show interaction Show interaction
zapB CDS Show interaction Show interaction Show interaction
zapC CDS Show interaction
zapC.EST5UTR 5UTR Show interaction