RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

eptB.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
eptB.5UTR EG12267.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 7534 1.00 0.00 6
Stat. Phase (Melamed et al. 2016) 1 1057 1.00 0.00 6
Iron Limitation (Melamed et al. 2016) 2 6646 1.00 0.50 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
mgrR sRNA Show interaction Show interaction Show interaction
ypfM.5UTR 5UTR Show interaction