RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

alaX

Summary:

Name ID Genomic annotation Chromosome Strand
alaX EG30012 tRNA chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 108 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 2 543 0.50 0.00 6
Iron Limitation (Melamed et al. 2016) 1 234 1.00 0.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
mgrR sRNA Show interaction Show interaction Show interaction
sdsR sRNA Show interaction