RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

sdsR

Summary:

Name ID Genomic annotation Chromosome Strand
sdsR G0-8883 sRNA chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Stat. Phase (Melamed et al. 2016) 85 6213 1.00 0.99 5
Iron Limitation (Melamed et al. 2016) 2 73 1.00 0.50 5

Interaction table:

Name Genomic annotation Stationary Phase Iron Limitation
G0-10698 ncRNA Show interaction
aceA CDS Show interaction
acnB.5UTR 5UTR Show interaction
alaX tRNA Show interaction
aldA CDS Show interaction
aphA CDS Show interaction
arcA.5UTR 5UTR Show interaction
artI CDS Show interaction
bacA CDS Show interaction
bamA CDS Show interaction
cpxP.5UTR 5UTR Show interaction
crr CDS Show interaction
cspD CDS Show interaction
cysU CDS Show interaction
dcuA CDS Show interaction
ddlB CDS Show interaction
degQ CDS Show interaction
fepA CDS Show interaction
fliY CDS Show interaction
fumC CDS Show interaction
fumC.5UTR 5UTR Show interaction
gabD CDS Show interaction
gadC CDS Show interaction
gadC.gadB.IGT IGT Show interaction
gatC CDS Show interaction
ghrA CDS Show interaction
glgB CDS Show interaction
glgC CDS Show interaction
glpD.yzgL.IGR IGR Show interaction
glpT CDS Show interaction
gltA.5UTR 5UTR Show interaction
grxC CDS Show interaction
hdeA CDS Show interaction
hdeD CDS Show interaction
hrpA CDS Show interaction
htrL CDS Show interaction
hupB.5UTR 5UTR Show interaction
insH-3.lnt.IGR IGR Show interaction
iscR CDS Show interaction
kdgR CDS Show interaction
kgtP CDS Show interaction
kgtP.rrfG.IGR IGR Show interaction
ldtD.ycbK.IGR IGR Show interaction
lepA CDS Show interaction
lpp.pykF.IGR IGR Show interaction
miaA.hfq.IGT IGT Show interaction
mutS CDS Show interaction
ompC CDS Show interaction Show interaction
oppA CDS Show interaction
patD CDS Show interaction
prlC.5UTR 5UTR Show interaction
queE.ygcE.IGR IGR Show interaction
rmf CDS Show interaction
rplL CDS Show interaction
rpoE CDS Show interaction
rpoS.nlpD.IGT IGT Show interaction
rsmH CDS Show interaction
rssA CDS Show interaction
rssB CDS Show interaction
sdaC.ygdH.IGR IGR Show interaction
slt.5UTR 5UTR Show interaction
sra.bdm.IGT IGT Show interaction
tamA CDS Show interaction
trxA CDS Show interaction
ubiA CDS Show interaction
ung CDS Show interaction
uspB CDS Show interaction
waaO CDS Show interaction
ybcM CDS Show interaction
yceF CDS Show interaction
ycgB CDS Show interaction
ycgB.5UTR 5UTR Show interaction
ydcH CDS Show interaction
ydiZ CDS Show interaction
yegP CDS Show interaction
yggN CDS Show interaction
yhcB CDS Show interaction
yhcO CDS Show interaction
yhhT CDS Show interaction
yifK CDS Show interaction
yihX CDS Show interaction
yjdC CDS Show interaction
yjeF.5UTR 5UTR Show interaction
yjgR CDS Show interaction
yjgZ.insG.IGR IGR Show interaction
yqaB CDS Show interaction
yqjA.5UTR 5UTR Show interaction
zapC CDS Show interaction