RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

gatC

Summary:

Name ID Genomic annotation Chromosome Strand
gatC EG12416 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 12 0.00 -1.00 5
Stat. Phase (Melamed et al. 2016) 3 268 0.00 -0.33 6
Iron Limitation (Melamed et al. 2016) 2 65 0.00 -0.50 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction
flgL.EST3UTR 3UTR Show interaction Show interaction
oxyS sRNA Show interaction Show interaction
sdsR sRNA Show interaction