RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

flgL.EST3UTR

Summary:

Name ID Genomic annotation Chromosome Strand
flgL.EST3UTR EG11545.EST3UTR 3UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 10 1.00 0.00 7
Stat. Phase (Melamed et al. 2016) 2 56 1.00 0.50 7
Iron Limitation (Melamed et al. 2016) 2 150 1.00 0.50 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
dps CDS Show interaction
garP CDS Show interaction
gatC CDS Show interaction Show interaction
secF.AS AS Show interaction