RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ybcM

Summary:

Name ID Genomic annotation Chromosome Strand
ybcM G6302 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 22 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 3 67 0.00 -0.33 4
Iron Limitation (Melamed et al. 2016) 1 31 0.00 -1.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
rprA sRNA Show interaction
sdsR sRNA Show interaction
ymfH CDS Show interaction Show interaction Show interaction