RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

rprA

Summary:

Name ID Genomic annotation Chromosome Strand
rprA G0-8863 sRNA chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 17 699 1.00 0.94 8
Stat. Phase (Melamed et al. 2016) 60 12289 0.98 0.97 8
Iron Limitation (Melamed et al. 2016) 19 905 1.00 0.95 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
G0-10698 ncRNA Show interaction
alaA.lrhA.IGR IGR Show interaction Show interaction Show interaction
argP.5UTR 5UTR Show interaction
ariR.ymgC.IGT IGT Show interaction Show interaction Show interaction
asr CDS Show interaction
bax CDS Show interaction Show interaction
bssR CDS Show interaction
crfC.5UTR 5UTR Show interaction
csgD.5UTR 5UTR Show interaction Show interaction Show interaction
cstA.5UTR 5UTR Show interaction
dadA CDS Show interaction
dinD CDS Show interaction
dmsD CDS Show interaction
evgA CDS Show interaction
fabZ CDS Show interaction Show interaction
fdhD.fdoG.IGR IGR Show interaction Show interaction Show interaction
flgE CDS Show interaction Show interaction
flhD CDS Show interaction Show interaction
fliZ CDS Show interaction Show interaction
focA CDS Show interaction Show interaction Show interaction
fruA.psuK.IGR IGR Show interaction
ftsA.ftsZ.IGT IGT Show interaction
fur CDS Show interaction
glgS CDS Show interaction
glnP.glnH.IGT IGT Show interaction
glpF CDS Show interaction
glpK CDS Show interaction
gltB CDS Show interaction
gltI.5UTR 5UTR Show interaction
hsdR CDS Show interaction Show interaction
katG CDS Show interaction
kgtP CDS Show interaction
lamB CDS Show interaction
leuS CDS Show interaction
lpd CDS Show interaction
mltD CDS Show interaction
nlpD CDS Show interaction Show interaction Show interaction
nrfA CDS Show interaction
ompF CDS Show interaction Show interaction Show interaction
osmB.5UTR 5UTR Show interaction Show interaction
osmB.EST3UTR 3UTR Show interaction
osmY.5UTR 5UTR Show interaction
pspB CDS Show interaction
queE.ygcE.IGR IGR Show interaction
rcsB CDS Show interaction Show interaction
rlmE CDS Show interaction
rpoE CDS Show interaction
sbmA.5UTR 5UTR Show interaction Show interaction
tolB CDS Show interaction
uspB CDS Show interaction
uspF.ynaE.IGR IGR Show interaction
waaU CDS Show interaction
wrbA CDS Show interaction
yahO CDS Show interaction
ybcM CDS Show interaction
ybeL CDS Show interaction
yciX CDS Show interaction
yciZ CDS Show interaction Show interaction Show interaction
ydaM CDS Show interaction
yfdK.yfdI.IGR IGR Show interaction
yfgM CDS Show interaction
yjiH CDS Show interaction
yjiT.mcrC.IGR IGR Show interaction
ymgA CDS Show interaction
yncL CDS Show interaction Show interaction Show interaction
yncL.EST3UTR 3UTR Show interaction
ypfM CDS Show interaction Show interaction
yqjH CDS Show interaction