RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

gltI.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
gltI.5UTR G6359.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 443 1.00 0.00 3
Stat. Phase (Melamed et al. 2016) 3 359 0.33 0.00 3
Iron Limitation (Melamed et al. 2016) 1 1006 1.00 0.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
gcvB sRNA Show interaction Show interaction Show interaction
malG.3UTR 3UTR Show interaction
rprA sRNA Show interaction