RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

malG.3UTR

Summary:

Name ID Genomic annotation Chromosome Strand
malG.3UTR EG10556.3UTR 3UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 13 466 1.00 0.92 7
Stat. Phase (Melamed et al. 2016) 22 1686 1.00 0.95 7
Iron Limitation (Melamed et al. 2016) 26 1893 1.00 0.96 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
aceB CDS Show interaction
amiA.5UTR 5UTR Show interaction Show interaction
aspA.5UTR 5UTR Show interaction
bacA CDS Show interaction
cspE CDS Show interaction
deoB.deoD.IGT IGT Show interaction Show interaction
deoD CDS Show interaction
dinD CDS Show interaction
eutB.AS AS Show interaction Show interaction Show interaction
fhuA CDS Show interaction
fhuA.fhuC.IGT IGT Show interaction Show interaction
fliC.5UTR 5UTR Show interaction
ftsA.ftsZ.IGT IGT Show interaction Show interaction Show interaction
ftsL CDS Show interaction Show interaction
gltI.5UTR 5UTR Show interaction
hemA CDS Show interaction Show interaction Show interaction
insH-1 CDS Show interaction
kgtP CDS Show interaction
lamB CDS Show interaction
lptD CDS Show interaction
lrhA CDS Show interaction
manX CDS Show interaction
mglB CDS Show interaction
nanC CDS Show interaction Show interaction
nlpD CDS Show interaction Show interaction Show interaction
nmpC CDS Show interaction Show interaction Show interaction
ompA CDS Show interaction
ompA.5UTR 5UTR Show interaction Show interaction
ompC CDS Show interaction Show interaction Show interaction
ompC.5UTR 5UTR Show interaction Show interaction Show interaction
ompW.5UTR 5UTR Show interaction
oppA CDS Show interaction
ptsI CDS Show interaction Show interaction Show interaction
rmf CDS Show interaction
rplT CDS Show interaction Show interaction
secM.EST5UTR 5UTR Show interaction
skp CDS Show interaction
treC.treB.IGT IGT Show interaction Show interaction
tsx CDS Show interaction
ybdZ CDS Show interaction