ompC
Some transcripts interact with the RNA untranslated regions:
ompC.5UTR
Summary:
| Name | ID | Genomic annotation | Chromosome | Strand |
|---|---|---|---|---|
| ompC | EG10670 | CDS | chr | - |
Library breakdown:
| Library | # of unique Interactions | # of chimeric fragments | Fraction as 2nd | SIC score | Longest U-tract |
|---|---|---|---|---|---|
| Exp. Phase (Melamed et al. 2016) | 5 | 230 | 0.00 | -0.20 | 3 |
| Stat. Phase (Melamed et al. 2016) | 9 | 2469 | 0.00 | -0.11 | 3 |
| Iron Limitation (Melamed et al. 2016) | 9 | 2072 | 0.22 | 0.11 | 6 |
Interaction table:
| Name | Genomic annotation | Exponential Phase | Stationary Phase | Iron Limitation |
|---|---|---|---|---|
| arcZ | sRNA | Show interaction | Show interaction | Show interaction |
| bhsA | CDS | — | Show interaction | — |
| fadA.fre.IGR | IGR | Show interaction | Show interaction | Show interaction |
| gadE.mdtE.IGT | IGT | — | Show interaction | — |
| glmZ | sRNA | Show interaction | — | Show interaction |
| glmZ.hemY.IGR | IGR | Show interaction | Show interaction | — |
| malG | CDS | — | — | Show interaction |
| malG.3UTR | 3UTR | Show interaction | Show interaction | Show interaction |
| micA | sRNA | — | Show interaction | — |
| omrB | sRNA | — | — | Show interaction |
| sdsR | sRNA | — | Show interaction | Show interaction |
| uhpT.EST3UTR | 3UTR | — | — | Show interaction |
| ybiJ.ybiC.IGR | IGR | — | Show interaction | Show interaction |