oppA
Some transcripts interact with the RNA untranslated regions:
oppA.5UTR
Summary:
| Name | ID | Genomic annotation | Chromosome | Strand |
|---|---|---|---|---|
| oppA | EG10674 | CDS | chr | + |
Library breakdown:
| Library | # of unique Interactions | # of chimeric fragments | Fraction as 2nd | SIC score | Longest U-tract |
|---|---|---|---|---|---|
| Exp. Phase (Melamed et al. 2016) | 3 | 1496 | 0.67 | 0.33 | 4 |
| Stat. Phase (Melamed et al. 2016) | 6 | 2586 | 0.17 | 0.00 | 4 |
| Iron Limitation (Melamed et al. 2016) | 5 | 1207 | 0.40 | 0.20 | 4 |
Interaction table:
| Name | Genomic annotation | Exponential Phase | Stationary Phase | Iron Limitation |
|---|---|---|---|---|
| arcZ | sRNA | Show interaction | Show interaction | Show interaction |
| cpxP.3UTR | 3UTR | — | Show interaction | Show interaction |
| cyaR | sRNA | — | Show interaction | — |
| gcvB | sRNA | Show interaction | Show interaction | Show interaction |
| insH-1 | CDS | Show interaction | — | Show interaction |
| malG.3UTR | 3UTR | — | Show interaction | — |
| sdsR | sRNA | — | Show interaction | — |
| uhpT.EST3UTR | 3UTR | — | — | Show interaction |