RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

oppA.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
oppA.5UTR EG10674.5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 416 0.00 -1.00 3
Stat. Phase (Melamed et al. 2016) 1 81 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 1 335 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
cpxP.3UTR 3UTR Show interaction
gcvB sRNA Show interaction Show interaction