nlpD
Some transcripts interact with the RNA untranslated regions:
nlpD.5UTR
Summary:
| Name | ID | Genomic annotation | Chromosome | Strand |
|---|---|---|---|---|
| nlpD | EG12111 | CDS | chr | - |
Library breakdown:
| Library | # of unique Interactions | # of chimeric fragments | Fraction as 2nd | SIC score | Longest U-tract |
|---|---|---|---|---|---|
| Exp. Phase (Melamed et al. 2016) | 7 | 2691 | 0.14 | 0.00 | 5 |
| Stat. Phase (Melamed et al. 2016) | 9 | 29164 | 0.33 | 0.22 | 5 |
| Iron Limitation (Melamed et al. 2016) | 10 | 9982 | 0.20 | 0.10 | 5 |
Interaction table:
| Name | Genomic annotation | Exponential Phase | Stationary Phase | Iron Limitation |
|---|---|---|---|---|
| arcZ | sRNA | — | Show interaction | Show interaction |
| arrS | cASt | — | Show interaction | Show interaction |
| cyaR | sRNA | Show interaction | Show interaction | Show interaction |
| dsrA | sRNA | Show interaction | Show interaction | Show interaction |
| malG.3UTR | 3UTR | Show interaction | Show interaction | Show interaction |
| mdtK.EST5UTR | 5UTR | — | Show interaction | Show interaction |
| mgrR | sRNA | Show interaction | Show interaction | Show interaction |
| rprA | sRNA | Show interaction | Show interaction | Show interaction |
| uhpT.EST3UTR | 3UTR | Show interaction | — | Show interaction |
| ybiJ.ybiC.IGR | IGR | Show interaction | Show interaction | Show interaction |