RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

mdtK.EST5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
mdtK.EST5UTR EG12400.EST5UTR 5UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 30 1.00 0.00 5
Stat. Phase (Melamed et al. 2016) 1 26 1.00 0.00 5
Iron Limitation (Melamed et al. 2016) 2 48 1.00 0.50 5

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
nlpD CDS Show interaction Show interaction
ompF CDS Show interaction Show interaction