RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

Interaction Data

nlpD - rprA interactions in library 'Stationary Phase':

Name Genomic annotation RNA1 RNA2
RNA1 RNA2 RNA1 RNA2 Chromosome Strand Start of first read Start of last read Chromosome Strand Start of last read Start of first read Interactions Odds Ratio
rprA nlpD sRNA CDS chr + 1770371 1770442 chr - 2867586 2867772 91 3.6
nlpD rprA CDS sRNA chr - 2867411 2867853 chr + 1770409 1770479 5825 48.9
nlpD rprA CDS sRNA chr - 2867885 2868212 chr + 1770413 1770476 100 2.8

nlpD reads

rprA reads