RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

aspA.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
aspA.5UTR EG10095.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 13 0.00 -1.00 2
Stat. Phase (Melamed et al. 2016) 1 34 0.00 -1.00 3
Iron Limitation (Melamed et al. 2016) 1 10 0.00 -1.00 3

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
malG.3UTR 3UTR Show interaction
narK.narG.IGR IGR Show interaction
sucD.EST3UTR 3UTR Show interaction