RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

sucD.EST3UTR

Summary:

Name ID Genomic annotation Chromosome Strand
sucD.EST3UTR EG10982.EST3UTR 3UTR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 9 3105 1.00 0.89 6
Stat. Phase (Melamed et al. 2016) 26 11509 0.92 0.88 6
Iron Limitation (Melamed et al. 2016) 18 5276 1.00 0.94 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
ackA CDS Show interaction Show interaction
allE.EST3UTR 3UTR Show interaction
artQ CDS Show interaction
aspA.5UTR 5UTR Show interaction
cysK.ptsH.IGR IGR Show interaction
dosC CDS Show interaction
fdnG CDS Show interaction
fdoG CDS Show interaction Show interaction Show interaction
fimA.5UTR 5UTR Show interaction
ftnA.5UTR 5UTR Show interaction Show interaction
gdhA CDS Show interaction
grcA.5UTR 5UTR Show interaction
hslV CDS Show interaction
kdgK CDS Show interaction
kefB CDS Show interaction
lpxA CDS Show interaction Show interaction Show interaction
mnmA CDS Show interaction
pepD CDS Show interaction
rayT CDS Show interaction
rcsF CDS Show interaction Show interaction Show interaction
rpsJ CDS Show interaction Show interaction
rsmB CDS Show interaction
secB CDS Show interaction Show interaction
tp2.aceE.IGR IGR Show interaction
yccU CDS Show interaction
yciE.3UTR 3UTR Show interaction
ydiJ CDS Show interaction Show interaction Show interaction
yehS CDS Show interaction Show interaction Show interaction
yfbV.ackA.IGR IGR Show interaction Show interaction Show interaction
yghD.yghF.IGR IGR Show interaction Show interaction
yjdM CDS Show interaction Show interaction Show interaction
yqjC.yqjD.IGT IGT Show interaction
yrbN CDS Show interaction Show interaction