RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

tp2.aceE.IGR

Flanking gene IDs:

  • G0-8894
  • EG10024

Summary:

Name ID Genomic annotation Chromosome Strand
tp2.aceE.IGR G0-8894.EG10024.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Stat. Phase (Melamed et al. 2016) 1 19 0.00 -1.00 5
Iron Limitation (Melamed et al. 2016) 1 30 0.00 -1.00 5

Interaction table:

Name Genomic annotation Stationary Phase Iron Limitation
glnA.3UTR 3UTR Show interaction
sucD.EST3UTR 3UTR Show interaction