RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yghD.yghF.IGR

Flanking gene IDs:

  • G7535
  • G7537

Summary:

Name ID Genomic annotation Chromosome Strand
yghD.yghF.IGR G7535.G7537.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 21 0.00 -1.00 6
Stat. Phase (Melamed et al. 2016) 1 27 0.00 -1.00 6
Iron Limitation (Melamed et al. 2016) 1 72 0.00 -1.00 6

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
sucD CDS Show interaction
sucD.EST3UTR 3UTR Show interaction Show interaction