RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

grcA.5UTR

Summary:

Name ID Genomic annotation Chromosome Strand
grcA.5UTR EG11784.5UTR 5UTR chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 48 0.00 -1.00 4
Stat. Phase (Melamed et al. 2016) 3 237 0.00 -0.33 4
Iron Limitation (Melamed et al. 2016) 2 143 0.00 -0.50 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
allR CDS Show interaction
arcZ sRNA Show interaction Show interaction
spf sRNA Show interaction Show interaction
sucD.EST3UTR 3UTR Show interaction