RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

fdoG

Summary:

Name ID Genomic annotation Chromosome Strand
fdoG EG11858 CDS chr -

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 2535 1.00 0.00 4
Stat. Phase (Melamed et al. 2016) 2 10360 1.00 0.50 5
Iron Limitation (Melamed et al. 2016) 2 3405 1.00 0.50 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
ryhB sRNA Show interaction
sucD CDS Show interaction
sucD.EST3UTR 3UTR Show interaction Show interaction Show interaction