RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

yfbV.ackA.IGR

Flanking gene IDs:

  • G7189
  • EG10027

Summary:

Name ID Genomic annotation Chromosome Strand
yfbV.ackA.IGR G7189.EG10027.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 58 0.00 -1.00 7
Stat. Phase (Melamed et al. 2016) 1 124 0.00 -1.00 7
Iron Limitation (Melamed et al. 2016) 1 183 0.00 -1.00 7

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
sucD.EST3UTR 3UTR Show interaction Show interaction Show interaction