RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

cspE

Summary:

Name ID Genomic annotation Chromosome Strand
cspE EG12179 CDS chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 2 135 1.00 0.50 8
Stat. Phase (Melamed et al. 2016) 4 122 0.25 0.00 8
Iron Limitation (Melamed et al. 2016) 1 108 1.00 0.00 8

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
malG.3UTR 3UTR Show interaction
mglB.5UTR 5UTR Show interaction
ryjB ncRNA Show interaction
ryjB.sgcQ.IGR IGR Show interaction
sodB.5UTR 5UTR Show interaction
tyrU tRNA Show interaction Show interaction