RILseqDB

A database of Hfq-mediated RNA interactions determined by RIL-seq

ryjB.sgcQ.IGR

Flanking gene IDs:

  • G0-10609
  • G7915

Summary:

Name ID Genomic annotation Chromosome Strand
ryjB.sgcQ.IGR G0-10609.G7915.IGR IGR chr +

Library breakdown:

Library # of unique Interactions # of chimeric fragments Fraction as 2nd SIC score Longest U-tract
Exp. Phase (Melamed et al. 2016) 1 22 1.00 0.00 3
Stat. Phase (Melamed et al. 2016) 4 225 1.00 0.75 5
Iron Limitation (Melamed et al. 2016) 1 229 1.00 0.00 4

Interaction table:

Name Genomic annotation Exponential Phase Stationary Phase Iron Limitation
aceK CDS Show interaction
cirA.5UTR 5UTR Show interaction
cspE CDS Show interaction
dcuA.5UTR 5UTR Show interaction Show interaction
kgtP CDS Show interaction